| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313814
Identifier: 158313814
GI number: 158313814
Start: 2378500
End: 2379699
Strand: Direct
Name: 158313814
Synonym: Franean1_1979
Alternate gene names: NA
Gene position: 2378500-2379699 (Clockwise)
Preceding gene: 158313808
Following gene: 158313816
Centisome position: 26.48
GC content: 70.92
Gene sequence:
>1200_bases ATGCGCAGGGTCGGCGTGACCGATTACGACGCCGGGGAACGGCGACGCACCGCGAACAGCGCGGCAACCGCGTTCGTGTT CGGGGCGCGGACGCATCGGGCGGGTTCGAAGGCGATCATGCGTCGCACGCCGAGCATGCTAAGGCTGCTGTCGATGGCGT TGCTCGCGATGGTGGCGCTCGCGGGCTGCGTTACCCCCATCGGGGGTGGAGGCGGCCCCGCTCCGACGACCAGTGCGGCC CCCAGCCCCGCCGGCCCGACGGGCTCGCCGTCCGCCGGCCCCACCCAGGCTCCGGACCCGAGCTCGGTTCCGAACCCCGG CGTCACCCCGGTGCCGACCCTCACCTCGGCGCCGGTGACCGCTGCCCCGGTGACCACTGCCCCGGTGACCACTGCGCCGG GGGCCACGCCGAGCGCCGCGCCAGTGCCCACGACACCCGGGTCGACTGATCCGCCTATCGGGACGGTTGCGAAGGGCGCG AGCACCTGGTACTTCGACAAGATCGCTCCGTCGATGACGGAGGCGGGAGTCTCGTGGTTCTACACCTGGGGAGCCGCGCC GGAGCGGATCGCGGCGCCGGCGGGAGTCGAGTTTGTCCCGATGATCTGGGGGCCGGGCTCGGTCACTCCGCAGACCCTCG CGACGGTGAAGGCCAACGGCCGCACCCTGCTCGGCTTCAACGAGCCTGACCTCCGCGGCCAGGCGGACATGCCGGTTCAG ACCGCTCTCGATCTGTGGCCGCAGCTGGAAGCCACCGGAATGCGTCTGGGTAGCCCGGCGCCCGCCGCCGGCGCCGCGGA CCCGAACAGCTGGTTCGGCCAGTTCATGGCCGGCGCGGCCCAGCGGGGCTACAAGGTCGACTTCATCGCGCTGCACTGGT ACGGCAGCGACTTCGACCCCACCCGGGCGACCGGTCAGCTCCGTGCCTACATCCAGGACGTGTACGACCGATACCACCTG CCGATCTGGCTGACCGAGTACAGCCTGATGAACTTCTCAACCTCACCCGCGACGGTCCCGAGCGCTGAGGGTCAGGCGGC GTTCGTGACTGCCTCCACCGCGATGCTCGAGAGCCTTCCGTTCGTTGAGCGCTACGCCTGGTTCGCGTTTCCCGCCAATC CCGACAGTCGGACCGGCCTGTATGACGAGTCAGGCCAGCCGACCCCGGCTGGTGTCGCCTACCAGGCGGCCGGCCGCTGA
Upstream 100 bases:
>100_bases GCCAGCCGCGACTGCCGGCCGGCCGGATCTCCGGCACGGCGCGGCCGGCGGAACAGCAGTTCATGGAAGGGCATTCAGGG GGCGAGGCAAGGAGAGATCC
Downstream 100 bases:
>100_bases TCTCCGGCCGGCCGGTGGCACATGGCGTCAGGCGGACAGGCTGGCGTGCATCTCCCACACCATGACCTCGGCCGGCTCGA CGGCGGTGATCCGCTGACCG
Product: glycosyl hydrolase 53 protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Serine Rich Protein; Lipoprotein
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MRRVGVTDYDAGERRRTANSAATAFVFGARTHRAGSKAIMRRTPSMLRLLSMALLAMVALAGCVTPIGGGGGPAPTTSAA PSPAGPTGSPSAGPTQAPDPSSVPNPGVTPVPTLTSAPVTAAPVTTAPVTTAPGATPSAAPVPTTPGSTDPPIGTVAKGA STWYFDKIAPSMTEAGVSWFYTWGAAPERIAAPAGVEFVPMIWGPGSVTPQTLATVKANGRTLLGFNEPDLRGQADMPVQ TALDLWPQLEATGMRLGSPAPAAGAADPNSWFGQFMAGAAQRGYKVDFIALHWYGSDFDPTRATGQLRAYIQDVYDRYHL PIWLTEYSLMNFSTSPATVPSAEGQAAFVTASTAMLESLPFVERYAWFAFPANPDSRTGLYDESGQPTPAGVAYQAAGR
Sequences:
>Translated_399_residues MRRVGVTDYDAGERRRTANSAATAFVFGARTHRAGSKAIMRRTPSMLRLLSMALLAMVALAGCVTPIGGGGGPAPTTSAA PSPAGPTGSPSAGPTQAPDPSSVPNPGVTPVPTLTSAPVTAAPVTTAPVTTAPGATPSAAPVPTTPGSTDPPIGTVAKGA STWYFDKIAPSMTEAGVSWFYTWGAAPERIAAPAGVEFVPMIWGPGSVTPQTLATVKANGRTLLGFNEPDLRGQADMPVQ TALDLWPQLEATGMRLGSPAPAAGAADPNSWFGQFMAGAAQRGYKVDFIALHWYGSDFDPTRATGQLRAYIQDVYDRYHL PIWLTEYSLMNFSTSPATVPSAEGQAAFVTASTAMLESLPFVERYAWFAFPANPDSRTGLYDESGQPTPAGVAYQAAGR >Mature_399_residues MRRVGVTDYDAGERRRTANSAATAFVFGARTHRAGSKAIMRRTPSMLRLLSMALLAMVALAGCVTPIGGGGGPAPTTSAA PSPAGPTGSPSAGPTQAPDPSSVPNPGVTPVPTLTSAPVTAAPVTTAPVTTAPGATPSAAPVPTTPGSTDPPIGTVAKGA STWYFDKIAPSMTEAGVSWFYTWGAAPERIAAPAGVEFVPMIWGPGSVTPQTLATVKANGRTLLGFNEPDLRGQADMPVQ TALDLWPQLEATGMRLGSPAPAAGAADPNSWFGQFMAGAAQRGYKVDFIALHWYGSDFDPTRATGQLRAYIQDVYDRYHL PIWLTEYSLMNFSTSPATVPSAEGQAAFVTASTAMLESLPFVERYAWFAFPANPDSRTGLYDESGQPTPAGVAYQAAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41392; Mature: 41392
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVGVTDYDAGERRRTANSAATAFVFGARTHRAGSKAIMRRTPSMLRLLSMALLAMVAL CCCCCCCCCCCCHHHHHCCHHHEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH AGCVTPIGGGGGPAPTTSAAPSPAGPTGSPSAGPTQAPDPSSVPNPGVTPVPTLTSAPVT HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAPVTTAPVTTAPGATPSAAPVPTTPGSTDPPIGTVAKGASTWYFDKIAPSMTEAGVSWF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHCCHHHHCCCEEE YTWGAAPERIAAPAGVEFVPMIWGPGSVTPQTLATVKANGRTLLGFNEPDLRGQADMPVQ EECCCCHHHHCCCCCCEEEEEEECCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCHH TALDLWPQLEATGMRLGSPAPAAGAADPNSWFGQFMAGAAQRGYKVDFIALHWYGSDFDP HHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC TRATGQLRAYIQDVYDRYHLPIWLTEYSLMNFSTSPATVPSAEGQAAFVTASTAMLESLP CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHCC FVERYAWFAFPANPDSRTGLYDESGQPTPAGVAYQAAGR HHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC >Mature Secondary Structure MRRVGVTDYDAGERRRTANSAATAFVFGARTHRAGSKAIMRRTPSMLRLLSMALLAMVAL CCCCCCCCCCCCHHHHHCCHHHEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH AGCVTPIGGGGGPAPTTSAAPSPAGPTGSPSAGPTQAPDPSSVPNPGVTPVPTLTSAPVT HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAPVTTAPVTTAPGATPSAAPVPTTPGSTDPPIGTVAKGASTWYFDKIAPSMTEAGVSWF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHCCHHHHCCCEEE YTWGAAPERIAAPAGVEFVPMIWGPGSVTPQTLATVKANGRTLLGFNEPDLRGQADMPVQ EECCCCHHHHCCCCCCEEEEEEECCCCCCHHHEEEEECCCCEEEECCCCCCCCCCCCCHH TALDLWPQLEATGMRLGSPAPAAGAADPNSWFGQFMAGAAQRGYKVDFIALHWYGSDFDP HHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC TRATGQLRAYIQDVYDRYHLPIWLTEYSLMNFSTSPATVPSAEGQAAFVTASTAMLESLP CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHCC FVERYAWFAFPANPDSRTGLYDESGQPTPAGVAYQAAGR HHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA