| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313729
Identifier: 158313729
GI number: 158313729
Start: 2271654
End: 2272331
Strand: Direct
Name: 158313729
Synonym: Franean1_1893
Alternate gene names: NA
Gene position: 2271654-2272331 (Clockwise)
Preceding gene: 158313728
Following gene: 158313731
Centisome position: 25.29
GC content: 74.04
Gene sequence:
>678_bases ATGGTCTGGGTGGCTAGGCTCCTGTTCATGCCGCCCGCCGCGCCCAACGAGCCCGCGTCTGAGCCCGAGCCCGTGTCTGT GTCCGAGCCCGAACCCCGCTCCGCCGGTGCACCGGCGGAGCCCGTCGCCGCGCCGCCGGGCGCGGACCCCAGGTGGGGCG ACCTGCGCCGCAAGACCGTGACCTGGTACGACCCGGCCGCCAGCGCGCGGTCGAGCCTGGCCATGTCCGGCCTGGAGTTC CTGCGGGCGATGGTCGACGGCACCGTCCCGCCCCCGCCGATCTCGCGGGTGTTCGACTTCCGTCCGGTCTCGGTGGAGGT CGGCGACGTGGTCTTCACCTGCGAGCCGGACGAGTCCGCGTACAACCCCATCGGACTCGTCCACGGTGGCCTCGTCTGCA CGCTGCTCGACACCGCGACGGCCTGCGCGGTGCACACGACGCTGGCGGCCGGTGCCGCCTACACCTCGCTGGAGATCAAG ATCAGCTACGTGCGCCCGGTCCACGTTCTCCCCGGACGGGCGAACACCCTGACCGCGCACGGCTGGGTCACCCGTCCCGG CCGCCGGGCCGCGTTCGCGCAGGGCGACGTCCGCGACGCGCAGGGCCGGGTCGTGGCCACCGCGAGCAGCACCTGCCTCG TCATGACCCCCGGGGACGGAGCGGGTTCCACGCCCTGA
Upstream 100 bases:
>100_bases CCCGGTCCGTGCGGACCGGAGCGGAGTCGCCGACCGGGAGCCCGTCGACCTGATCGCGTCACGGGGGCGAGATGTGGCTG GGAAGTAATTTCCAACTCAG
Downstream 100 bases:
>100_bases TCCGTGCCGGGCGTGCCGTTCAGCGTTCTGGGGCGGCCGGGCGGAGGAATCGTTCCACGTCGGCGGCCTCGGCACGCAGC GCCTCGGTGGCGGCGGGGGA
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Thioesterase Family Protein; Thioesterase; Phenylacetic Acid Degradation-Like Protein; Aromatic Compounds Catabolic Protein; PaaI Thioesterase; Aromatic Compounds Degradation Protein PaaI; Domain 1 Protein; Protein Involved In Aromatic Compounds Catabolism; Orf_Bo
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MVWVARLLFMPPAAPNEPASEPEPVSVSEPEPRSAGAPAEPVAAPPGADPRWGDLRRKTVTWYDPAASARSSLAMSGLEF LRAMVDGTVPPPPISRVFDFRPVSVEVGDVVFTCEPDESAYNPIGLVHGGLVCTLLDTATACAVHTTLAAGAAYTSLEIK ISYVRPVHVLPGRANTLTAHGWVTRPGRRAAFAQGDVRDAQGRVVATASSTCLVMTPGDGAGSTP
Sequences:
>Translated_225_residues MVWVARLLFMPPAAPNEPASEPEPVSVSEPEPRSAGAPAEPVAAPPGADPRWGDLRRKTVTWYDPAASARSSLAMSGLEF LRAMVDGTVPPPPISRVFDFRPVSVEVGDVVFTCEPDESAYNPIGLVHGGLVCTLLDTATACAVHTTLAAGAAYTSLEIK ISYVRPVHVLPGRANTLTAHGWVTRPGRRAAFAQGDVRDAQGRVVATASSTCLVMTPGDGAGSTP >Mature_225_residues MVWVARLLFMPPAAPNEPASEPEPVSVSEPEPRSAGAPAEPVAAPPGADPRWGDLRRKTVTWYDPAASARSSLAMSGLEF LRAMVDGTVPPPPISRVFDFRPVSVEVGDVVFTCEPDESAYNPIGLVHGGLVCTLLDTATACAVHTTLAAGAAYTSLEIK ISYVRPVHVLPGRANTLTAHGWVTRPGRRAAFAQGDVRDAQGRVVATASSTCLVMTPGDGAGSTP
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23523; Mature: 23523
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWVARLLFMPPAAPNEPASEPEPVSVSEPEPRSAGAPAEPVAAPPGADPRWGDLRRKTV CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TWYDPAASARSSLAMSGLEFLRAMVDGTVPPPPISRVFDFRPVSVEVGDVVFTCEPDESA EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEECCEEEEECCCCCC YNPIGLVHGGLVCTLLDTATACAVHTTLAAGAAYTSLEIKISYVRPVHVLPGRANTLTAH CCCEEHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECEEEECCCCCCEEEEC GWVTRPGRRAAFAQGDVRDAQGRVVATASSTCLVMTPGDGAGSTP CEEECCCCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCC >Mature Secondary Structure MVWVARLLFMPPAAPNEPASEPEPVSVSEPEPRSAGAPAEPVAAPPGADPRWGDLRRKTV CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TWYDPAASARSSLAMSGLEFLRAMVDGTVPPPPISRVFDFRPVSVEVGDVVFTCEPDESA EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEECCEEEEECCCCCC YNPIGLVHGGLVCTLLDTATACAVHTTLAAGAAYTSLEIKISYVRPVHVLPGRANTLTAH CCCEEHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECEEEECCCCCCEEEEC GWVTRPGRRAAFAQGDVRDAQGRVVATASSTCLVMTPGDGAGSTP CEEECCCCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA