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The map label for this gene is yfdE [H]

Identifier: 158313713

GI number: 158313713

Start: 2255157

End: 2256281

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_1877

Alternate gene names: 158313713

Gene position: 2255157-2256281 (Clockwise)

Preceding gene: 158313712

Following gene: 158313714

Centisome position: 25.11

GC content: 75.02

Gene sequence:

>1125_bases
GTGACGTTCCCTCTGCGCGGGGTCCGCGTTCTCGACCTCGCCCGGCACTATCCCGGCGGGTACTGCACCCTGCTGCTGGC
CGACCTCGGCGCCGAGGTGGTCAAGGTCGAGGCCCCTGGCGCCGGCGATCCGCTCCGCGGGCCGGCCGGGACGTCGCCCG
CCCACATCGGCCTCAACCGCGGCAAGCGCTCCATCACCCTCGACACGCGGCGGCCGGCGGGGCTCGACGTGCTCCGCCGG
CTCGTGGCCGGGGCGGACGCCGTCGTCGACAGCTCCCGCCCGGGTGCTCTGGAGGAGGCGGGCTTCGGGTATCTGCAGGC
GGCAGCCGTCAACCCGCGGCTGGTGTGGGCGGCGCTGTCCGCCTTCGGCGCTGACGGCCCCTACGCCGGACGGGCCGGCC
ACGAGGTCACCTTTCTCGGTCAGTCCGGCGCGCTGGCCGCGATGGCCGAGCAGCTCCCGTGGATGCCCCAGACGGCGATC
GCCGCGCCCATGGCCGGTGCCGTCGCGGCGATGGCCGTGGCCGCCGCGCTCGCCGGCGCTGCCCGAACCGGAACCGGCTG
CTTCGTCGACGCCTCGATCACGGATGCCTCGACGTGGCTGTTGTCCGGCATGCCGGCCCAGTTCACCGCCGGTGCGCCCA
AGTTGGGATGGGCCGCGGGCCGCCGGCTCTACCGATGCGCCGACGACCGGTGGGTGAGCGTCTCGGCGGCCGAGTCCCGG
ACCTGGCGTGCGCTCTGCCGTGTCCTCGACGCCGACGATCTGGCGGACCGGCTCACGGCCCCCGTCGAGGAGCAGACGGC
GATGGCCGAGCGCTTCGAGAAAGTCTTCGCCGCCCGGCCGGCGGCGCAGTGGATGGAGTCGGACCCCGCCGCGACGATCG
GCGCGGTGAACGAGGGCCCGGATCTGCTGACCGATCCGCACGCCTCGGCACGCGGAGCCCTCGTGGACGTCATGGGCACG
CTGGTGCCAGCGACGCCGGTCCGGCTCCGGGACGCCGAGGGACGACGGTCGTCAACGCCCACCACCGGACCGCCGGAACT
CGGCGCGGACACCGACGAGATCCTCCTCGCCGCCGGCGTCCCCGACGGCGAGCTCGCCCGACTGCGGGCCGACGGCATCA
TCTGA

Upstream 100 bases:

>100_bases
GCGCCGTCCACCTCGACCGGACCGGCCTCGGCCCGCACGACGAGCCGGACCGCATCACATCCCTCGACCAGATCGCCCGA
TACCTGCATAGGTTTGGCGG

Downstream 100 bases:

>100_bases
GCTGGCCCTGTTGGTTGACCGCGCGGGCATTGTGAGTCAGGGTGAAACTAGTTACTGAAACTAGTTTCAAGAGTGCGTGA
CGCGGCGAGAGCCGACGGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTFPLRGVRVLDLARHYPGGYCTLLLADLGAEVVKVEAPGAGDPLRGPAGTSPAHIGLNRGKRSITLDTRRPAGLDVLRR
LVAGADAVVDSSRPGALEEAGFGYLQAAAVNPRLVWAALSAFGADGPYAGRAGHEVTFLGQSGALAAMAEQLPWMPQTAI
AAPMAGAVAAMAVAAALAGAARTGTGCFVDASITDASTWLLSGMPAQFTAGAPKLGWAAGRRLYRCADDRWVSVSAAESR
TWRALCRVLDADDLADRLTAPVEEQTAMAERFEKVFAARPAAQWMESDPAATIGAVNEGPDLLTDPHASARGALVDVMGT
LVPATPVRLRDAEGRRSSTPTTGPPELGADTDEILLAAGVPDGELARLRADGII

Sequences:

>Translated_374_residues
MTFPLRGVRVLDLARHYPGGYCTLLLADLGAEVVKVEAPGAGDPLRGPAGTSPAHIGLNRGKRSITLDTRRPAGLDVLRR
LVAGADAVVDSSRPGALEEAGFGYLQAAAVNPRLVWAALSAFGADGPYAGRAGHEVTFLGQSGALAAMAEQLPWMPQTAI
AAPMAGAVAAMAVAAALAGAARTGTGCFVDASITDASTWLLSGMPAQFTAGAPKLGWAAGRRLYRCADDRWVSVSAAESR
TWRALCRVLDADDLADRLTAPVEEQTAMAERFEKVFAARPAAQWMESDPAATIGAVNEGPDLLTDPHASARGALVDVMGT
LVPATPVRLRDAEGRRSSTPTTGPPELGADTDEILLAAGVPDGELARLRADGII
>Mature_373_residues
TFPLRGVRVLDLARHYPGGYCTLLLADLGAEVVKVEAPGAGDPLRGPAGTSPAHIGLNRGKRSITLDTRRPAGLDVLRRL
VAGADAVVDSSRPGALEEAGFGYLQAAAVNPRLVWAALSAFGADGPYAGRAGHEVTFLGQSGALAAMAEQLPWMPQTAIA
APMAGAVAAMAVAAALAGAARTGTGCFVDASITDASTWLLSGMPAQFTAGAPKLGWAAGRRLYRCADDRWVSVSAAESRT
WRALCRVLDADDLADRLTAPVEEQTAMAERFEKVFAARPAAQWMESDPAATIGAVNEGPDLLTDPHASARGALVDVMGTL
VPATPVRLRDAEGRRSSTPTTGPPELGADTDEILLAAGVPDGELARLRADGII

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=28.8713910761155, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=29.6019900497512, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=29.6019900497512, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI300863124, Length=333, Percent_Identity=29.4294294294294, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=26.9129287598945, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=32.6923076923077, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=32.824427480916, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI13376042, Length=333, Percent_Identity=26.1261261261261, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=39.2857142857143, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=37.4149659863946, Blast_Score=95, Evalue=8e-20,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=26.4957264957265, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788717, Length=140, Percent_Identity=35.7142857142857, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=294, Percent_Identity=26.530612244898, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI115535051, Length=290, Percent_Identity=26.8965517241379, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24648431, Length=409, Percent_Identity=31.2958435207824, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24585488, Length=326, Percent_Identity=26.3803680981595, Blast_Score=115, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38676; Mature: 38545

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFPLRGVRVLDLARHYPGGYCTLLLADLGAEVVKVEAPGAGDPLRGPAGTSPAHIGLNR
CCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEECCC
GKRSITLDTRRPAGLDVLRRLVAGADAVVDSSRPGALEEAGFGYLQAAAVNPRLVWAALS
CCEEEEECCCCCCHHHHHHHHHCCCHHHCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHH
AFGADGPYAGRAGHEVTFLGQSGALAAMAEQLPWMPQTAIAAPMAGAVAAMAVAAALAGA
HHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
ARTGTGCFVDASITDASTWLLSGMPAQFTAGAPKLGWAAGRRLYRCADDRWVSVSAAESR
CCCCCCEEEECCCCCHHHHHHCCCCCHHCCCCCCCCHHHHHHHEEECCCCEEEEECHHHH
TWRALCRVLDADDLADRLTAPVEEQTAMAERFEKVFAARPAAQWMESDPAATIGAVNEGP
HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEECCCCCC
DLLTDPHASARGALVDVMGTLVPATPVRLRDAEGRRSSTPTTGPPELGADTDEILLAAGV
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
PDGELARLRADGII
CCCHHHHHHCCCCC
>Mature Secondary Structure 
TFPLRGVRVLDLARHYPGGYCTLLLADLGAEVVKVEAPGAGDPLRGPAGTSPAHIGLNR
CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEECCC
GKRSITLDTRRPAGLDVLRRLVAGADAVVDSSRPGALEEAGFGYLQAAAVNPRLVWAALS
CCEEEEECCCCCCHHHHHHHHHCCCHHHCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHH
AFGADGPYAGRAGHEVTFLGQSGALAAMAEQLPWMPQTAIAAPMAGAVAAMAVAAALAGA
HHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
ARTGTGCFVDASITDASTWLLSGMPAQFTAGAPKLGWAAGRRLYRCADDRWVSVSAAESR
CCCCCCEEEECCCCCHHHHHHCCCCCHHCCCCCCCCHHHHHHHEEECCCCEEEEECHHHH
TWRALCRVLDADDLADRLTAPVEEQTAMAERFEKVFAARPAAQWMESDPAATIGAVNEGP
HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEECCCCCC
DLLTDPHASARGALVDVMGTLVPATPVRLRDAEGRRSSTPTTGPPELGADTDEILLAAGV
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
PDGELARLRADGII
CCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]