| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313468
Identifier: 158313468
GI number: 158313468
Start: 1949774
End: 1950346
Strand: Direct
Name: 158313468
Synonym: Franean1_1632
Alternate gene names: NA
Gene position: 1949774-1950346 (Clockwise)
Preceding gene: 158313467
Following gene: 158313469
Centisome position: 21.71
GC content: 67.71
Gene sequence:
>573_bases ATGGCACGTATCGACCCGCTTCCCCTCAGGGAATGGCCGAAGGAGATGCGTCCGGCCCTGGCAGCCCTGACGCCGCCCGA GCCGTTGCACCCTCCGATGCCCTCCGAGGGCAAGCCCAAGGCGCTGAACACACTGGGGACGCTCGCCCACCACCCCAAGC TGGCGCACGCCTTCTTCACGTTCAACGGCCACATCCAGCGCGCGACGACGCTGACGCTGCGGCAGCGGGAGATCATCGTC CTGCGGGTGGCGGCACTGCGCAAGTGCTACTACGAGTGGACGCAGCACGTCGTCATGGGCCACGACATCGGCCTGACCGA CGACGAGATCACACGCATCGCGCTGGGCCCGGACGCGCCCTTCTGGGACCCGGTCGAGGCGGCGCTGATCCGCGCGGTGG ACGAGCTCCTCACCGAGGGTGCGATCGGCGCCGGAACCTGGGAGATCCTCGTAGCCAAGCTCGACACCCAGCAGCTGCTG GACATCATCTTCACGGTCGGCGCGTACGAGACCCTGGCGCTGATGATGCGCTCGTTCGAGCTCGAGCTCGACGACGACCT CACCCAGACCTGA
Upstream 100 bases:
>100_bases GGCTCGCGCCGGTTATCACAGTACTATTGACCTGCTGTGTGATCGGTATCACTATCGGTTGCCGGGTGTTTACCGGTTCA AGGGCGGAGGAACCTCTGAT
Downstream 100 bases:
>100_bases CCGCCGGACGAGCGACCCGGCACGGCGCCGTCCCCCCCGGGTGGTGGCACACCCAGACCCGACAGGAGTAGTCATGGCCG TGACCGTCACCGAGATCAGC
Product: carboxymuconolactone decarboxylase
Products: NA
Alternate protein names: Alkylhydroperoxidase; Alkylhydroperoxidase Like Protein; 4-Carboxymuconolactone Decarboxylase
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MARIDPLPLREWPKEMRPALAALTPPEPLHPPMPSEGKPKALNTLGTLAHHPKLAHAFFTFNGHIQRATTLTLRQREIIV LRVAALRKCYYEWTQHVVMGHDIGLTDDEITRIALGPDAPFWDPVEAALIRAVDELLTEGAIGAGTWEILVAKLDTQQLL DIIFTVGAYETLALMMRSFELELDDDLTQT
Sequences:
>Translated_190_residues MARIDPLPLREWPKEMRPALAALTPPEPLHPPMPSEGKPKALNTLGTLAHHPKLAHAFFTFNGHIQRATTLTLRQREIIV LRVAALRKCYYEWTQHVVMGHDIGLTDDEITRIALGPDAPFWDPVEAALIRAVDELLTEGAIGAGTWEILVAKLDTQQLL DIIFTVGAYETLALMMRSFELELDDDLTQT >Mature_189_residues ARIDPLPLREWPKEMRPALAALTPPEPLHPPMPSEGKPKALNTLGTLAHHPKLAHAFFTFNGHIQRATTLTLRQREIIVL RVAALRKCYYEWTQHVVMGHDIGLTDDEITRIALGPDAPFWDPVEAALIRAVDELLTEGAIGAGTWEILVAKLDTQQLLD IIFTVGAYETLALMMRSFELELDDDLTQT
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21278; Mature: 21147
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARIDPLPLREWPKEMRPALAALTPPEPLHPPMPSEGKPKALNTLGTLAHHPKLAHAFFT CCCCCCCCCHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEE FNGHIQRATTLTLRQREIIVLRVAALRKCYYEWTQHVVMGHDIGLTDDEITRIALGPDAP ECCCEEHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC FWDPVEAALIRAVDELLTEGAIGAGTWEILVAKLDTQQLLDIIFTVGAYETLALMMRSFE CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC LELDDDLTQT CCCCCCCCCC >Mature Secondary Structure ARIDPLPLREWPKEMRPALAALTPPEPLHPPMPSEGKPKALNTLGTLAHHPKLAHAFFT CCCCCCCCHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEE FNGHIQRATTLTLRQREIIVLRVAALRKCYYEWTQHVVMGHDIGLTDDEITRIALGPDAP ECCCEEHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC FWDPVEAALIRAVDELLTEGAIGAGTWEILVAKLDTQQLLDIIFTVGAYETLALMMRSFE CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC LELDDDLTQT CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA