| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is yehP [H]
Identifier: 158313392
GI number: 158313392
Start: 1862108
End: 1863409
Strand: Direct
Name: yehP [H]
Synonym: Franean1_1555
Alternate gene names: 158313392
Gene position: 1862108-1863409 (Clockwise)
Preceding gene: 158313391
Following gene: 158313393
Centisome position: 20.73
GC content: 74.42
Gene sequence:
>1302_bases GTGAAGCAGGAACCCGCACCGCGAGGTGTGGGAATCCCCGGTCTTCAGACCGGGGAGGAGGTCAATGAGCGCACTCCGGC GGGCGAGGGGTCCACCCACGCCGGCACCCGCGCCGGTGCCGCCGTCGCCGACGACACGGAGCGGTTGCGGCGCTGGCGCA TGGTGCTGGGCGCGCCGGCCGCGCCCGTCCTGGACGGGCGGATCTCCCTGTCCGGCCCCGACGGGGAGATCGACGCGGCG CTCGGTGCCCTCTACGACGCGGACGCGGCGGGGGAGGGGCGCCGGCGGCGCTCGGGCGGTCTGGGCGCGTCGGCGCCGTC CGTGGCCCGCTGGCTGGGAGATATCCGGACCTACTTCCCGACCTCGGTCGTGCGCGTGCTGCAACGCGACGCGGTCGCTC GCCTGGGGCTCGGTCAGCTCCTGCTCGAGCCGGAGCTGCTCGCGGCCGCGGAACCGGACGTCCACCTCGTCGGGACACTG CTGTCGCTGCGCTCCGCGCTGCCCGAACGCACCAGGGAGACCGCCCGCGCCGTGGTCCGGCGCGTCGTCGAGGACATCGA GCGGCGGTTGGAACAGTCGCTGCGCAGCGCCGTCCTGGGCGCCGTGGACCGGACGTCCCGCACCCGCACTCCCCGCCTGC CCGACGTCGACTGGGATCGCACCATCCTCGCGAACCTGCGCAACTACCAGCCTGAGCAGCACACCGTGATCGTCGATCGG CTCATCGGCCACACCAGGGCGCGGCGCACCGCCGCCCTGCGGGACGTCATCCTGCTCATCGACCAGTCCGGGTCGATGGC GTCGTCCGTCGTCTACGCGGGGGTGCTCGGCGCGTCACTGGCGACGCTGCGGGCCGTGTCCACCCGGCTGATCGTCTTCG ACACGTCGGTGGTGGACCTGACCGACCAGCTCGACGACCCGGTCGACCTGCTGTTCGGCGTCCGGCTCGGCGGCGGGACC GACATCGACCGTGCCGTCGGCTACGGCGCGTCGCTCGTCACCCGGCCCACCGACACGGTCTTCGTCCTGATCAGCGACCT GATCGAGGGCGGTGACCAGTCGTCGCTGGTGGCCCGGCTGCGGGCGCTCGTCGAGGCCGGGGTGTGCGTCGTCGTCCTGC TCGCCCTGTCCGACGACGGCACCCCCGCCTACGACCACCGGCTCGCCGCGACCTGCGCCGAGCTCGGGGCGCCCGCGTTC GCCTGCACCCCGGACAGGTTCCCCGAGCTGCTGGCCACCGCGCTGCGCCGCGACGACGTCGGCCGCTGGGCCTCCGTCCA GGGGCTGGTGCGCCCGGCCTGA
Upstream 100 bases:
>100_bases GTGAACGCGGCGGTCAACATTCTGGCCGCGGGGCTCGCGGTGGCTGCCTGTGGAGATGGAGTGAGACCGCCTCGCTCCTG AAGCGAGGAGGCGTCCGTTG
Downstream 100 bases:
>100_bases CCGGGCGCCGGGGGCGCCGGGGCCGCCGGGGCCGCCCGGATGCCGGGTCCGCGGGGGTGCGTCGCGACGATCGCTGGTGA AATGCTGGGCCGGGCAGGCA
Product: VWA containing CoxE family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MKQEPAPRGVGIPGLQTGEEVNERTPAGEGSTHAGTRAGAAVADDTERLRRWRMVLGAPAAPVLDGRISLSGPDGEIDAA LGALYDADAAGEGRRRRSGGLGASAPSVARWLGDIRTYFPTSVVRVLQRDAVARLGLGQLLLEPELLAAAEPDVHLVGTL LSLRSALPERTRETARAVVRRVVEDIERRLEQSLRSAVLGAVDRTSRTRTPRLPDVDWDRTILANLRNYQPEQHTVIVDR LIGHTRARRTAALRDVILLIDQSGSMASSVVYAGVLGASLATLRAVSTRLIVFDTSVVDLTDQLDDPVDLLFGVRLGGGT DIDRAVGYGASLVTRPTDTVFVLISDLIEGGDQSSLVARLRALVEAGVCVVVLLALSDDGTPAYDHRLAATCAELGAPAF ACTPDRFPELLATALRRDDVGRWASVQGLVRPA
Sequences:
>Translated_433_residues MKQEPAPRGVGIPGLQTGEEVNERTPAGEGSTHAGTRAGAAVADDTERLRRWRMVLGAPAAPVLDGRISLSGPDGEIDAA LGALYDADAAGEGRRRRSGGLGASAPSVARWLGDIRTYFPTSVVRVLQRDAVARLGLGQLLLEPELLAAAEPDVHLVGTL LSLRSALPERTRETARAVVRRVVEDIERRLEQSLRSAVLGAVDRTSRTRTPRLPDVDWDRTILANLRNYQPEQHTVIVDR LIGHTRARRTAALRDVILLIDQSGSMASSVVYAGVLGASLATLRAVSTRLIVFDTSVVDLTDQLDDPVDLLFGVRLGGGT DIDRAVGYGASLVTRPTDTVFVLISDLIEGGDQSSLVARLRALVEAGVCVVVLLALSDDGTPAYDHRLAATCAELGAPAF ACTPDRFPELLATALRRDDVGRWASVQGLVRPA >Mature_433_residues MKQEPAPRGVGIPGLQTGEEVNERTPAGEGSTHAGTRAGAAVADDTERLRRWRMVLGAPAAPVLDGRISLSGPDGEIDAA LGALYDADAAGEGRRRRSGGLGASAPSVARWLGDIRTYFPTSVVRVLQRDAVARLGLGQLLLEPELLAAAEPDVHLVGTL LSLRSALPERTRETARAVVRRVVEDIERRLEQSLRSAVLGAVDRTSRTRTPRLPDVDWDRTILANLRNYQPEQHTVIVDR LIGHTRARRTAALRDVILLIDQSGSMASSVVYAGVLGASLATLRAVSTRLIVFDTSVVDLTDQLDDPVDLLFGVRLGGGT DIDRAVGYGASLVTRPTDTVFVLISDLIEGGDQSSLVARLRALVEAGVCVVVLLALSDDGTPAYDHRLAATCAELGAPAF ACTPDRFPELLATALRRDDVGRWASVQGLVRPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788440, Length=371, Percent_Identity=36.9272237196765, Blast_Score=235, Evalue=5e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008912 - InterPro: IPR002035 [H]
Pfam domain/function: PF05762 VWA_CoxE [H]
EC number: NA
Molecular weight: Translated: 46163; Mature: 46163
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQEPAPRGVGIPGLQTGEEVNERTPAGEGSTHAGTRAGAAVADDTERLRRWRMVLGAPA CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC APVLDGRISLSGPDGEIDAALGALYDADAAGEGRRRRSGGLGASAPSVARWLGDIRTYFP CCEECCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH TSVVRVLQRDAVARLGLGQLLLEPELLAAAEPDVHLVGTLLSLRSALPERTRETARAVVR HHHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH RVVEDIERRLEQSLRSAVLGAVDRTSRTRTPRLPDVDWDRTILANLRNYQPEQHTVIVDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH LIGHTRARRTAALRDVILLIDQSGSMASSVVYAGVLGASLATLRAVSTRLIVFDTSVVDL HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHH TDQLDDPVDLLFGVRLGGGTDIDRAVGYGASLVTRPTDTVFVLISDLIEGGDQSSLVARL HHHCCCHHHHHHHCCCCCCCCHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHH RALVEAGVCVVVLLALSDDGTPAYDHRLAATCAELGAPAFACTPDRFPELLATALRRDDV HHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCC GRWASVQGLVRPA CCHHHHCCCCCCC >Mature Secondary Structure MKQEPAPRGVGIPGLQTGEEVNERTPAGEGSTHAGTRAGAAVADDTERLRRWRMVLGAPA CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC APVLDGRISLSGPDGEIDAALGALYDADAAGEGRRRRSGGLGASAPSVARWLGDIRTYFP CCEECCEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH TSVVRVLQRDAVARLGLGQLLLEPELLAAAEPDVHLVGTLLSLRSALPERTRETARAVVR HHHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH RVVEDIERRLEQSLRSAVLGAVDRTSRTRTPRLPDVDWDRTILANLRNYQPEQHTVIVDR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH LIGHTRARRTAALRDVILLIDQSGSMASSVVYAGVLGASLATLRAVSTRLIVFDTSVVDL HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHH TDQLDDPVDLLFGVRLGGGTDIDRAVGYGASLVTRPTDTVFVLISDLIEGGDQSSLVARL HHHCCCHHHHHHHCCCCCCCCHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHH RALVEAGVCVVVLLALSDDGTPAYDHRLAATCAELGAPAFACTPDRFPELLATALRRDDV HHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCC GRWASVQGLVRPA CCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]