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The map label for this gene is nirD [H]

Identifier: 158313331

GI number: 158313331

Start: 1794586

End: 1794996

Strand: Direct

Name: nirD [H]

Synonym: Franean1_1493

Alternate gene names: 158313331

Gene position: 1794586-1794996 (Clockwise)

Preceding gene: 158313330

Following gene: 158313332

Centisome position: 19.98

GC content: 70.32

Gene sequence:

>411_bases
GTGAGGACCGTGGAAGCCGCGAAGGCCGCGAAGGCCGCGGAGGCCGTGGAGGCCGTGGAGGCCGACGGGTGGGACAGCGT
CTGCGGCTCCCGCGACCTCCCCGTCGAGCGGGGCGTCGCCGCTCTGCTCGGTGACGTCCAGGTCGCGATCTTCCGGACCT
ATGACGGCGCGCTCTTCGCTGTCGGCAACCAGGATCCGTTCTCCGGAGCCTTCGTGCTCTCCCGGGGAATCGTGGGCTCC
CGGGGAGAGACTCCCACTGTCGCCTCCCCACTTCACAAGCAGGTCTTCGACCTGCGCACCGGTCGCTGCCTCGACTCGGA
CGGCGTCGTCATCCCGACCTACCCGGTGCGGGAACGTGACGGTTACGTGGAGGTCCACGTCGGGACGACAGCCGGGTGGG
CGCCGCAGTGA

Upstream 100 bases:

>100_bases
TCGTGAACGCACCGGAGGTGCCGGACCCGTCCATCCAGTGGGCGCCCGAGCGCGGCCAGATCAAACCGCTGATCGCCGGC
CCGACCCTGGAGGTGGTGTC

Downstream 100 bases:

>100_bases
CCGACTCCGGCCCGGTGACGGCGCCCGTCGAGCCGCTCGCCGGTTACACGGTCGCGCTCACCGCGGCGCGCCGGCGTGAG
GAGTTCGGCGCGGCCCTGGA

Product: nitrite reductase (NAD(P)H), small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRTVEAAKAAKAAEAVEAVEADGWDSVCGSRDLPVERGVAALLGDVQVAIFRTYDGALFAVGNQDPFSGAFVLSRGIVGS
RGETPTVASPLHKQVFDLRTGRCLDSDGVVIPTYPVRERDGYVEVHVGTTAGWAPQ

Sequences:

>Translated_136_residues
MRTVEAAKAAKAAEAVEAVEADGWDSVCGSRDLPVERGVAALLGDVQVAIFRTYDGALFAVGNQDPFSGAFVLSRGIVGS
RGETPTVASPLHKQVFDLRTGRCLDSDGVVIPTYPVRERDGYVEVHVGTTAGWAPQ
>Mature_136_residues
MRTVEAAKAAKAAEAVEAVEADGWDSVCGSRDLPVERGVAALLGDVQVAIFRTYDGALFAVGNQDPFSGAFVLSRGIVGS
RGETPTVASPLHKQVFDLRTGRCLDSDGVVIPTYPVRERDGYVEVHVGTTAGWAPQ

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=103, Percent_Identity=43.6893203883495, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 14346; Mature: 14346

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVEAAKAAKAAEAVEAVEADGWDSVCGSRDLPVERGVAALLGDVQVAIFRTYDGALFA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCEEEE
VGNQDPFSGAFVLSRGIVGSRGETPTVASPLHKQVFDLRTGRCLDSDGVVIPTYPVRERD
ECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCEEECCCCCCCCC
GYVEVHVGTTAGWAPQ
CEEEEEECCCCCCCCC
>Mature Secondary Structure
MRTVEAAKAAKAAEAVEAVEADGWDSVCGSRDLPVERGVAALLGDVQVAIFRTYDGALFA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCEEEE
VGNQDPFSGAFVLSRGIVGSRGETPTVASPLHKQVFDLRTGRCLDSDGVVIPTYPVRERD
ECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCEEECCCCCCCCC
GYVEVHVGTTAGWAPQ
CEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]