| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is nasB [H]
Identifier: 158313330
GI number: 158313330
Start: 1792049
End: 1794589
Strand: Direct
Name: nasB [H]
Synonym: Franean1_1492
Alternate gene names: 158313330
Gene position: 1792049-1794589 (Clockwise)
Preceding gene: 158313328
Following gene: 158313331
Centisome position: 19.95
GC content: 70.21
Gene sequence:
>2541_bases ATGCCCGGAACCCCCCGGCAGCACATCGTCGTCGTCGGCAACGGCATGGTCGGCCAGCGGTTCGTGGAGACACTGCGGCA ACGTGACACCGGGGGCCGGTTTTCGATCACCGTGGTGGGCGAGGAGCCGCGCCGTGCGTACGATCGCGTCGCGCTCTCGT CCTACTTCGACGGCGTGAGTGCCGACGAACTGGACCTCGTGGCCGCGGGCATCTACGACAGCCCGCATGCGACGTTGCAT CTGGACGAGTCCGTCACGGCGATCGACCGGGCCGCCTCGACCGTCACCACCAGCCGCGGTCGCACCCTCGGCTACGACGT CCTCGTGCTGGCCACCGGCTCGTACCCGTTCGTTCCTCCTGTTCCGGGCAGGGACCTCGAAGGCTGCTTCGTCTACCGGA CCCTCGACGATCTGGACGCGATCCGCGCCGCTGCCACTGCGGCGGCCGAACACACGCGTGGCCGCCGGGCCGGGCTGGTT GTCGGCGGTGGGCTGCTCGGGCTCGAGGCGGCTCGGGCGCTGCGCCTGCTGGGCATGAGTCCGCACGTGGTGGAGCTGGC GCCGCGGCTGATGCCGCTCCAGGTGGACGAGCCCGGCGGCGCGGTGCTCCGCCGACTGATCGAGCGCCTCGGCGTCACCG TCCACACGGCGACGTCCGTGGCCGCCGTCGAGCCCAGCGGCGGACGGCTGCTCGCCACCCTGGCCAACGGCACCGAGCTC GACCTGGACGTCGTCGTCTTCTCCGCCGGCATCCGTCCCCGCGACCAGTTGGCGCGTGAGTGTGGCCTTGCTGTCGGGCC GCGCGGCGGCGTCGCGGTGGACGCACGCTGCCGCACGACCGACGAGTCCATCTATGCCATCGGGGAGTGCGCCGTCGTCG ACGGTCATGTGTACGGCCTGGTCGCCCCGGGCTACGACATGGCCTCCGTGGTCGCCGAGCAGCTGCTCGGCCGGGACGCC ACGTTCACCGGCGCGGACCTGAGCACGAAGCTCAAGCTGCTCGGTGTCGACGTCGCCAGCTTCGGTGACGCCCTCGCGGC CACGGCGGGTGCGCTGGAGGTCCGTGTCGAGAACGCGGTGGAGAACACCTACGCCAAGATCGTCGTCTCCGACGACGCCA GCACGCTGCTCGGCGGCATCCTCGTGGGTGACGCGAGCCGCTATGCGGCACTGCGCCCGCTGGTCGGGCGGCGGCTCCCG GCGGACCCCGTCGCGATGATCGCCCCGACCGGCGGAGTCGACCTCGACGCGGGGGCCCTGCCTCGCGAGGCGCAGATCTG CTCCTGCAACGACGTCTCCAAGGGCGCGATCCTGGACTCGATCGTCGAGCACGGTCTCACCGACGTCGCGGGGATCAAGG CGTGTACGCGGGCCGGCACGACCTGCGGGTCCTGCGTGGCCCTGCTCAAGCCACTGCTGGCCGAGGCCGGCGTCGAGGTC GGCACGGGGCTGTGTGAGCACTTCGACGTCACCCGGGCCGAGCTCTTCGAGATCGCCCGCAGTCAACGGATCGGCACCTT CACCGAGCTCGTTCAGCGGCACGGACGTGGCCGCGGCTGCGACACGTGCAAGCCCGCCGTGGCCTCGATCCTGGCCAGCC TGGGGCACGGCTATGTCCTGGACGGAGAACAGGCCGCACTGCAGGACACCAACGACCATTTCCTCGCGAACCTCCAGAAG AACGGCACCTACTCGGTGGTGCCCCGCATCCCGGGCGGGGAGATCACGCCGGAGAAGCTGATCGTCATCGGCGAGGTGGC CCGCGACTTCGGCCTCTACGTGAAGATCACCGGCGGGCAGCGCGTCGACCTGTTCGGGGCGCGGGTCGAGCAGCTGCCGC TGATCTGGAGGCGTCTGGTCGACGCCGGGATGGAGTCCGGCCACGCCTACGGGAAGGCGATGCGGACCGTGAAGAGCTGC GTCGGCTCGACGTGGTGCCGCTACGGTGTCCAGGACTCGGTCGGCCTCGCGATAGACCTCGAACTGCGCTACCGCGGCAT CCGTGGCCCCCACAAGATCAAGGCTGGTGTCAGCGGCTGCGCCCGCGAATGTGCCGAGGCGCAGAGCAAGGACATAGGCG TGATCGCCACCGATACCGGCTGGAACCTCTACGTCGGCGGCAACGGGGGAGCACGCCCGCGACACGCCGATCTGTTCCTC ACCTCGGTCGACACCGAGACTCTCGTCAGGACCATCGACCGATTCATCATGTTCTACGCACGCACGGCCGACCGCCTGCA GCGGACGTCCACCTGGGTCGAGTCGCTGTCCGCGGACGGTCAGGACGGACTGGCGTACCTGCGCGGCGTGCTCGTCGACG ACAGCCTCGGCATCTGCGCCGAACTGGACGCCGCCATGGAATCGCACGTCGCGCACTACTCTGACGAGTGGGCCGACACC CTCGCCGACCCCGAGCGGCTCAGGCGGTTCGTCAGTTTCGTGAACGCACCGGAGGTGCCGGACCCGTCCATCCAGTGGGC GCCCGAGCGCGGCCAGATCAAACCGCTGATCGCCGGCCCGACCCTGGAGGTGGTGTCGTGA
Upstream 100 bases:
>100_bases TCGGCGAAGTAACCGGGCCGACCGTCAGGGATAACTCGCGGTGGTCAGTGTGGCACTGACCAATGTGGCACCGACCCCAG ATCGGAGAGGTGACTGCGTC
Downstream 100 bases:
>100_bases GGACCGTGGAAGCCGCGAAGGCCGCGAAGGCCGCGGAGGCCGTGGAGGCCGTGGAGGCCGACGGGTGGGACAGCGTCTGC GGCTCCCGCGACCTCCCCGT
Product: nitrite reductase (NAD(P)H), large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 845
Protein sequence:
>846_residues MPGTPRQHIVVVGNGMVGQRFVETLRQRDTGGRFSITVVGEEPRRAYDRVALSSYFDGVSADELDLVAAGIYDSPHATLH LDESVTAIDRAASTVTTSRGRTLGYDVLVLATGSYPFVPPVPGRDLEGCFVYRTLDDLDAIRAAATAAAEHTRGRRAGLV VGGGLLGLEAARALRLLGMSPHVVELAPRLMPLQVDEPGGAVLRRLIERLGVTVHTATSVAAVEPSGGRLLATLANGTEL DLDVVVFSAGIRPRDQLARECGLAVGPRGGVAVDARCRTTDESIYAIGECAVVDGHVYGLVAPGYDMASVVAEQLLGRDA TFTGADLSTKLKLLGVDVASFGDALAATAGALEVRVENAVENTYAKIVVSDDASTLLGGILVGDASRYAALRPLVGRRLP ADPVAMIAPTGGVDLDAGALPREAQICSCNDVSKGAILDSIVEHGLTDVAGIKACTRAGTTCGSCVALLKPLLAEAGVEV GTGLCEHFDVTRAELFEIARSQRIGTFTELVQRHGRGRGCDTCKPAVASILASLGHGYVLDGEQAALQDTNDHFLANLQK NGTYSVVPRIPGGEITPEKLIVIGEVARDFGLYVKITGGQRVDLFGARVEQLPLIWRRLVDAGMESGHAYGKAMRTVKSC VGSTWCRYGVQDSVGLAIDLELRYRGIRGPHKIKAGVSGCARECAEAQSKDIGVIATDTGWNLYVGGNGGARPRHADLFL TSVDTETLVRTIDRFIMFYARTADRLQRTSTWVESLSADGQDGLAYLRGVLVDDSLGICAELDAAMESHVAHYSDEWADT LADPERLRRFVSFVNAPEVPDPSIQWAPERGQIKPLIAGPTLEVVS
Sequences:
>Translated_846_residues MPGTPRQHIVVVGNGMVGQRFVETLRQRDTGGRFSITVVGEEPRRAYDRVALSSYFDGVSADELDLVAAGIYDSPHATLH LDESVTAIDRAASTVTTSRGRTLGYDVLVLATGSYPFVPPVPGRDLEGCFVYRTLDDLDAIRAAATAAAEHTRGRRAGLV VGGGLLGLEAARALRLLGMSPHVVELAPRLMPLQVDEPGGAVLRRLIERLGVTVHTATSVAAVEPSGGRLLATLANGTEL DLDVVVFSAGIRPRDQLARECGLAVGPRGGVAVDARCRTTDESIYAIGECAVVDGHVYGLVAPGYDMASVVAEQLLGRDA TFTGADLSTKLKLLGVDVASFGDALAATAGALEVRVENAVENTYAKIVVSDDASTLLGGILVGDASRYAALRPLVGRRLP ADPVAMIAPTGGVDLDAGALPREAQICSCNDVSKGAILDSIVEHGLTDVAGIKACTRAGTTCGSCVALLKPLLAEAGVEV GTGLCEHFDVTRAELFEIARSQRIGTFTELVQRHGRGRGCDTCKPAVASILASLGHGYVLDGEQAALQDTNDHFLANLQK NGTYSVVPRIPGGEITPEKLIVIGEVARDFGLYVKITGGQRVDLFGARVEQLPLIWRRLVDAGMESGHAYGKAMRTVKSC VGSTWCRYGVQDSVGLAIDLELRYRGIRGPHKIKAGVSGCARECAEAQSKDIGVIATDTGWNLYVGGNGGARPRHADLFL TSVDTETLVRTIDRFIMFYARTADRLQRTSTWVESLSADGQDGLAYLRGVLVDDSLGICAELDAAMESHVAHYSDEWADT LADPERLRRFVSFVNAPEVPDPSIQWAPERGQIKPLIAGPTLEVVS >Mature_845_residues PGTPRQHIVVVGNGMVGQRFVETLRQRDTGGRFSITVVGEEPRRAYDRVALSSYFDGVSADELDLVAAGIYDSPHATLHL DESVTAIDRAASTVTTSRGRTLGYDVLVLATGSYPFVPPVPGRDLEGCFVYRTLDDLDAIRAAATAAAEHTRGRRAGLVV GGGLLGLEAARALRLLGMSPHVVELAPRLMPLQVDEPGGAVLRRLIERLGVTVHTATSVAAVEPSGGRLLATLANGTELD LDVVVFSAGIRPRDQLARECGLAVGPRGGVAVDARCRTTDESIYAIGECAVVDGHVYGLVAPGYDMASVVAEQLLGRDAT FTGADLSTKLKLLGVDVASFGDALAATAGALEVRVENAVENTYAKIVVSDDASTLLGGILVGDASRYAALRPLVGRRLPA DPVAMIAPTGGVDLDAGALPREAQICSCNDVSKGAILDSIVEHGLTDVAGIKACTRAGTTCGSCVALLKPLLAEAGVEVG TGLCEHFDVTRAELFEIARSQRIGTFTELVQRHGRGRGCDTCKPAVASILASLGHGYVLDGEQAALQDTNDHFLANLQKN GTYSVVPRIPGGEITPEKLIVIGEVARDFGLYVKITGGQRVDLFGARVEQLPLIWRRLVDAGMESGHAYGKAMRTVKSCV GSTWCRYGVQDSVGLAIDLELRYRGIRGPHKIKAGVSGCARECAEAQSKDIGVIATDTGWNLYVGGNGGARPRHADLFLT SVDTETLVRTIDRFIMFYARTADRLQRTSTWVESLSADGQDGLAYLRGVLVDDSLGICAELDAAMESHVAHYSDEWADTL ADPERLRRFVSFVNAPEVPDPSIQWAPERGQIKPLIAGPTLEVVS
Specific function: Nitrate assimilation (denitrification); second step. [C]
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Homo sapiens, GI65787454, Length=324, Percent_Identity=25.6172839506173, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI226437568, Length=324, Percent_Identity=25.6172839506173, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI21389617, Length=324, Percent_Identity=25.6172839506173, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI1789765, Length=839, Percent_Identity=51.0131108462455, Blast_Score=828, Evalue=0.0, Organism=Escherichia coli, GI1789065, Length=331, Percent_Identity=31.7220543806647, Blast_Score=136, Evalue=6e-33, Organism=Escherichia coli, GI1788892, Length=287, Percent_Identity=27.1777003484321, Blast_Score=87, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17559934, Length=283, Percent_Identity=28.2685512367491, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI281359715, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI281359713, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639250, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI18543267, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639252, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639257, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=7e-15, Organism=Drosophila melanogaster, GI24585130, Length=331, Percent_Identity=22.3564954682779, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR012748 - InterPro: IPR017881 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 - InterPro: IPR017941 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.7.1.4 [H]
Molecular weight: Translated: 89662; Mature: 89531
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS00365 NIR_SIR ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGTPRQHIVVVGNGMVGQRFVETLRQRDTGGRFSITVVGEEPRRAYDRVALSSYFDGVS CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC ADELDLVAAGIYDSPHATLHLDESVTAIDRAASTVTTSRGRTLGYDVLVLATGSYPFVPP CCCHHEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEECEEEEEEEECCCCCCCC VPGRDLEGCFVYRTLDDLDAIRAAATAAAEHTRGRRAGLVVGGGLLGLEAARALRLLGMS CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCC PHVVELAPRLMPLQVDEPGGAVLRRLIERLGVTVHTATSVAAVEPSGGRLLATLANGTEL CHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCEEEEECCCCCEEEEEECCCCCC DLDVVVFSAGIRPRDQLARECGLAVGPRGGVAVDARCRTTDESIYAIGECAVVDGHVYGL EEEEEEEECCCCCHHHHHHHCCCEECCCCCEEEECEECCCCCCEEEEEEEEEECCEEEEE VAPGYDMASVVAEQLLGRDATFTGADLSTKLKLLGVDVASFGDALAATAGALEVRVENAV EECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHHCHHHHHCCCCEEEEEHHHH ENTYAKIVVSDDASTLLGGILVGDASRYAALRPLVGRRLPADPVAMIAPTGGVDLDAGAL CCCEEEEEECCCHHHHHCCCEECCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC PREAQICSCNDVSKGAILDSIVEHGLTDVAGIKACTRAGTTCGSCVALLKPLLAEAGVEV CCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH GTGLCEHFDVTRAELFEIARSQRIGTFTELVQRHGRGRGCDTCKPAVASILASLGHGYVL HCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEE DGEQAALQDTNDHFLANLQKNGTYSVVPRIPGGEITPEKLIVIGEVARDFGLYVKITGGQ CCCHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHEEEEEEHHHCCCEEEEECCCC RVDLFGARVEQLPLIWRRLVDAGMESGHAYGKAMRTVKSCVGSTWCRYGVQDSVGLAIDL EEEHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ELRYRGIRGPHKIKAGVSGCARECAEAQSKDIGVIATDTGWNLYVGGNGGARPRHADLFL EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEE TSVDTETLVRTIDRFIMFYARTADRLQRTSTWVESLSADGQDGLAYLRGVLVDDSLGICA EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHH ELDAAMESHVAHYSDEWADTLADPERLRRFVSFVNAPEVPDPSIQWAPERGQIKPLIAGP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEECC TLEVVS CEEECC >Mature Secondary Structure PGTPRQHIVVVGNGMVGQRFVETLRQRDTGGRFSITVVGEEPRRAYDRVALSSYFDGVS CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC ADELDLVAAGIYDSPHATLHLDESVTAIDRAASTVTTSRGRTLGYDVLVLATGSYPFVPP CCCHHEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEECEEEEEEEECCCCCCCC VPGRDLEGCFVYRTLDDLDAIRAAATAAAEHTRGRRAGLVVGGGLLGLEAARALRLLGMS CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCC PHVVELAPRLMPLQVDEPGGAVLRRLIERLGVTVHTATSVAAVEPSGGRLLATLANGTEL CHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCEEEEECCCCCEEEEEECCCCCC DLDVVVFSAGIRPRDQLARECGLAVGPRGGVAVDARCRTTDESIYAIGECAVVDGHVYGL EEEEEEEECCCCCHHHHHHHCCCEECCCCCEEEECEECCCCCCEEEEEEEEEECCEEEEE VAPGYDMASVVAEQLLGRDATFTGADLSTKLKLLGVDVASFGDALAATAGALEVRVENAV EECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHHCHHHHHCCCCEEEEEHHHH ENTYAKIVVSDDASTLLGGILVGDASRYAALRPLVGRRLPADPVAMIAPTGGVDLDAGAL CCCEEEEEECCCHHHHHCCCEECCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC PREAQICSCNDVSKGAILDSIVEHGLTDVAGIKACTRAGTTCGSCVALLKPLLAEAGVEV CCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH GTGLCEHFDVTRAELFEIARSQRIGTFTELVQRHGRGRGCDTCKPAVASILASLGHGYVL HCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEE DGEQAALQDTNDHFLANLQKNGTYSVVPRIPGGEITPEKLIVIGEVARDFGLYVKITGGQ CCCHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHEEEEEEHHHCCCEEEEECCCC RVDLFGARVEQLPLIWRRLVDAGMESGHAYGKAMRTVKSCVGSTWCRYGVQDSVGLAIDL EEEHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ELRYRGIRGPHKIKAGVSGCARECAEAQSKDIGVIATDTGWNLYVGGNGGARPRHADLFL EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEE TSVDTETLVRTIDRFIMFYARTADRLQRTSTWVESLSADGQDGLAYLRGVLVDDSLGICA EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHH ELDAAMESHVAHYSDEWADTLADPERLRRFVSFVNAPEVPDPSIQWAPERGQIKPLIAGP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEECC TLEVVS CEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8468296 [H]