| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158313328
Identifier: 158313328
GI number: 158313328
Start: 1786072
End: 1787274
Strand: Direct
Name: 158313328
Synonym: Franean1_1490
Alternate gene names: NA
Gene position: 1786072-1787274 (Clockwise)
Preceding gene: 158313327
Following gene: 158313330
Centisome position: 19.88
GC content: 71.57
Gene sequence:
>1203_bases GTGAGCCCCGACACCGCACCGGTGATCTACCCGGCCCGCCGAGCGGTCGAGCACGCTGTGTCCCTGCCGGGCGTGCGGCC ACTGCGGCTGTTCCCCGTCCTGTGGCCGCTGCGCCAGGTGGAGATCATCGCGTTCGTCGACGACGAGCAGGCGTACGAGG TCATCGACCACTTTCTGGTGCGTGGGATCGCCGAGGGCCAGATCAGCCGCATCACGGACCTGGCCTGGTTTCTCGCGCTG CCGGAGGCGCTGGTACGTCGGTGCGTGGATTTCCTGCGGACGATCGGCCATCTCCAGGTGGCCGGCGACCGCCTGCTGCT GACCGACCTCGGGATTCGGTCCTGGCAGGCCGGGATCCGCTACGAGGCGAAGGAGAGCCGTCAACACCTGCTGTTCGAGC GCCGGACCGGCTGGCCGCTGCCGCGGCGCTACTACCAGGGTGACGTCGCCGTCCTGCCCGACCTGAACGTCCCGGACGAG CGCCTGCGCGACCGCAGCCGCTTCCTGGGAATGTTCGACGCGACCCCGTGGCGCCCGGACGTCGTCCACGCCCTGACGGC TCGGCCCGACCGGGCCGAGTACAACCTGCCGGGCACGCTCAGCGACCTGCGGGTGCTCGGTGAGCGGGACGTCTACCTGC CGGTCTATCTGGTGGAGACGGTCGGGCACGGGGTGTTCGTGTACACGGCCCTGGCGGAGGAACCGGACCGGCTGTTCGCC GACGTCGTGACGCAGATCGGCACCGTCGGTGACCTGATCGAGGCTGAAGGGCTCCTCGAGCCTCGTCAGATCTGGACGGA ATGGCTGACGAAGTCGTCCGTCGGGCCCGGGGTGCTGAAAAAGGGCGGCAGCGGCGTGTGGCGCATCGTGTTGCCCGCGG CGAGCTTCGGTCCGGCCCGGGGGCAGCTGGCGGTGACCCGGGTCGGGTCTTACGAGCTGCGCCGCCACCACTTCGCCCAG CTGTGGTGCGACGACGCCGAGGTGCGCCGGCGCGCGGTCAGGGAGCGCGCACTCGGCCTGAGCCGGTCCCGCGGCGTCGA CTCCGCGGACGACCTGCGCGAGCGCGTCGCCCCGGTCGCGCGCGCTCTCCAGGTCCCCGCTCCGAGCCTTGACGAACTGC GGACGTTCGCCGCGCGTTCCGGTAGGACACGCGAGGTCGCCCGTCTCGAGGCGCTGGCCGCTGCAGCCTCGCGACGCCCC TGA
Upstream 100 bases:
>100_bases CCGAGTTCCGGAAGAAGATCAGCATGATGGAGGACCACCTGCGCCGGGACGGCGACCTGAGGCTCTCCTGCGAAATCGAG AAGCTGCTGCGGGACCCGCG
Downstream 100 bases:
>100_bases CACGCCTGGCCGTCACCGGTCGGCCTGCCTTTGCACCACGAGGGCACGGCAGTCGGCATCCAGGCGACCGGGATACTCCC CCATCGGCCCGCTCGTCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MSPDTAPVIYPARRAVEHAVSLPGVRPLRLFPVLWPLRQVEIIAFVDDEQAYEVIDHFLVRGIAEGQISRITDLAWFLAL PEALVRRCVDFLRTIGHLQVAGDRLLLTDLGIRSWQAGIRYEAKESRQHLLFERRTGWPLPRRYYQGDVAVLPDLNVPDE RLRDRSRFLGMFDATPWRPDVVHALTARPDRAEYNLPGTLSDLRVLGERDVYLPVYLVETVGHGVFVYTALAEEPDRLFA DVVTQIGTVGDLIEAEGLLEPRQIWTEWLTKSSVGPGVLKKGGSGVWRIVLPAASFGPARGQLAVTRVGSYELRRHHFAQ LWCDDAEVRRRAVRERALGLSRSRGVDSADDLRERVAPVARALQVPAPSLDELRTFAARSGRTREVARLEALAAAASRRP
Sequences:
>Translated_400_residues MSPDTAPVIYPARRAVEHAVSLPGVRPLRLFPVLWPLRQVEIIAFVDDEQAYEVIDHFLVRGIAEGQISRITDLAWFLAL PEALVRRCVDFLRTIGHLQVAGDRLLLTDLGIRSWQAGIRYEAKESRQHLLFERRTGWPLPRRYYQGDVAVLPDLNVPDE RLRDRSRFLGMFDATPWRPDVVHALTARPDRAEYNLPGTLSDLRVLGERDVYLPVYLVETVGHGVFVYTALAEEPDRLFA DVVTQIGTVGDLIEAEGLLEPRQIWTEWLTKSSVGPGVLKKGGSGVWRIVLPAASFGPARGQLAVTRVGSYELRRHHFAQ LWCDDAEVRRRAVRERALGLSRSRGVDSADDLRERVAPVARALQVPAPSLDELRTFAARSGRTREVARLEALAAAASRRP >Mature_399_residues SPDTAPVIYPARRAVEHAVSLPGVRPLRLFPVLWPLRQVEIIAFVDDEQAYEVIDHFLVRGIAEGQISRITDLAWFLALP EALVRRCVDFLRTIGHLQVAGDRLLLTDLGIRSWQAGIRYEAKESRQHLLFERRTGWPLPRRYYQGDVAVLPDLNVPDER LRDRSRFLGMFDATPWRPDVVHALTARPDRAEYNLPGTLSDLRVLGERDVYLPVYLVETVGHGVFVYTALAEEPDRLFAD VVTQIGTVGDLIEAEGLLEPRQIWTEWLTKSSVGPGVLKKGGSGVWRIVLPAASFGPARGQLAVTRVGSYELRRHHFAQL WCDDAEVRRRAVRERALGLSRSRGVDSADDLRERVAPVARALQVPAPSLDELRTFAARSGRTREVARLEALAAAASRRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44958; Mature: 44827
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDTAPVIYPARRAVEHAVSLPGVRPLRLFPVLWPLRQVEIIAFVDDEQAYEVIDHFLV CCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHEEEEEEECCHHHHHHHHHHHH RGIAEGQISRITDLAWFLALPEALVRRCVDFLRTIGHLQVAGDRLLLTDLGIRSWQAGIR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEECCCCHHHHCCCC YEAKESRQHLLFERRTGWPLPRRYYQGDVAVLPDLNVPDERLRDRSRFLGMFDATPWRPD CCHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH VVHALTARPDRAEYNLPGTLSDLRVLGERDVYLPVYLVETVGHGVFVYTALAEEPDRLFA HHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHCCCEEEEEEHHCCHHHHHH DVVTQIGTVGDLIEAEGLLEPRQIWTEWLTKSSVGPGVLKKGGSGVWRIVLPAASFGPAR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCCCCCCC GQLAVTRVGSYELRRHHFAQLWCDDAEVRRRAVRERALGLSRSRGVDSADDLRERVAPVA CCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHH RALQVPAPSLDELRTFAARSGRTREVARLEALAAAASRRP HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPDTAPVIYPARRAVEHAVSLPGVRPLRLFPVLWPLRQVEIIAFVDDEQAYEVIDHFLV CCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHEEEEEEECCHHHHHHHHHHHH RGIAEGQISRITDLAWFLALPEALVRRCVDFLRTIGHLQVAGDRLLLTDLGIRSWQAGIR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEECCCCHHHHCCCC YEAKESRQHLLFERRTGWPLPRRYYQGDVAVLPDLNVPDERLRDRSRFLGMFDATPWRPD CCHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH VVHALTARPDRAEYNLPGTLSDLRVLGERDVYLPVYLVETVGHGVFVYTALAEEPDRLFA HHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHCCCEEEEEEHHCCHHHHHH DVVTQIGTVGDLIEAEGLLEPRQIWTEWLTKSSVGPGVLKKGGSGVWRIVLPAASFGPAR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCCCCCCC GQLAVTRVGSYELRRHHFAQLWCDDAEVRRRAVRERALGLSRSRGVDSADDLRERVAPVA CCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHH RALQVPAPSLDELRTFAARSGRTREVARLEALAAAASRRP HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA