| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is spaC [H]
Identifier: 158313183
GI number: 158313183
Start: 1605101
End: 1606411
Strand: Direct
Name: spaC [H]
Synonym: Franean1_1333
Alternate gene names: 158313183
Gene position: 1605101-1606411 (Clockwise)
Preceding gene: 158313182
Following gene: 158313184
Centisome position: 17.87
GC content: 74.37
Gene sequence:
>1311_bases ATGACCGTCGTCATCGACACGCGAGTACGCGCGGCCACCGTCGCGACGCGGCTGGCCGACGCGCTGACGGTGCCGCCACC ACCCGAGCCAGACGGCGACCGGAGCCCGAGCAGCCCACGCTGGCAGGGCCAGTCGCTGGCCGAGGGAGCGGCCGGCATCG CGGTTCTCCACGGCGTACGCGCCCGCGCCCACGCTGGGGAGTGGGCCACGGTCGATGCCTGGCTGACGGCCGCTGCCAGG GAAGACCTTTCGGTCGGGCCGGGTGCGGGCCTGTGGTTCGGCGCCCCGGCGCTTGCGCTCGCGCTGACCGCGGCAGCCCC ACCCGGCCGCCACCTCGGCGCGGCCCGGCAGCTGCACACCGCCGTCGAAAGGCTGACCGAGCGCCGGCTCGCGGCGGCCC ACGCCCGGATTGATGCCGGACAGCGACCGGAGCGCGCCGAGTTCGACCTGGTCCGAGGCCTGACCGGGCTCGGCGCCTAT CTGGCGACCCGCAACCCCGACGGCGAGCAGCTCCGCCAGATCCTGACCTACCTTGTCCGACTCACTGAACCGCTACCCGC CACGGACACGGCCGGGCTGGCCGCGCCAGGCTGGTGGACCATCGACGTTCCCACCACCGCGCCACCCGGACCGTTCGCCG ACGGCCATGCCGATCAGGGCATGGCCCACGGCATCGCGGGGCCGCTCGCACTGCTGGCGCTCACACACCGCCGTGGGGTC ATCGTCCCCGGCCACACCGACGCCCTCGACCGGATCTGTCACTGGCTGGACACCTGGCGCCAGGACGGCCCCGCCGGGCC CTGGTGGCCCGAACGGATCACCGCCAGTGAGTTGCTGACAGGCCGGGCCGCCCAGCCCGGCCCAGGCCGCGCATCCTGGT GTTACGGCACTCCCGGCCTGGCCCGCGCCCAGCAGCTCGCCGCGGTCGCGCTGGCCGACACCACCCGGCAACAACGCGCC GAGGCAGCCCTCGCAGCCTGCGTCACGGACCCCGCCCAGCTCGCCCGGTTCGTCGACCCGGCGCTCTGCCACGGCTGGGC GGGCCTGGTCGCCACCGTTCGCTGCGCAGCCGCGGATGCCCGCTTCTACCCGCTCGACAGCCACCTACCCAGCTTGGTCA AGCAGCTCCTCGACAGCCTCGACGCGGCGCAAGGCGCCGACTGGCAGCTACCCGGCCTCATTGAGGGCACGGCAGGAATC GCCGCGGTCCTGCATGCCGTGGCGACCAACACCACCACAGCCTGGGAGTCCGCCCTCCTGCTCGACCTCCCCCCGGCTTG GCCGGCAGGGGACCGGGGAGCCGAAGCATGA
Upstream 100 bases:
>100_bases CAGCGGAGCGCACCTGCCACCGTCTCGCCCGCGCGGTCGCGCTCGCCTGGCACAACACCGGCCAGCACCCCCCTCTCGAC CTCGCCAGAGCGGAAGGCCC
Downstream 100 bases:
>100_bases GCACTCTTGACATCGAGTCCGCCTGGTGCGGGATGACCGTGTGGTGCCAGGACTGGCGGGCCGCGGAACACCTGGGGGTC ACCCAACTGGCGCCACTGCT
Product: lanthionine synthetase C family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTVVIDTRVRAATVATRLADALTVPPPPEPDGDRSPSSPRWQGQSLAEGAAGIAVLHGVRARAHAGEWATVDAWLTAAAR EDLSVGPGAGLWFGAPALALALTAAAPPGRHLGAARQLHTAVERLTERRLAAAHARIDAGQRPERAEFDLVRGLTGLGAY LATRNPDGEQLRQILTYLVRLTEPLPATDTAGLAAPGWWTIDVPTTAPPGPFADGHADQGMAHGIAGPLALLALTHRRGV IVPGHTDALDRICHWLDTWRQDGPAGPWWPERITASELLTGRAAQPGPGRASWCYGTPGLARAQQLAAVALADTTRQQRA EAALAACVTDPAQLARFVDPALCHGWAGLVATVRCAAADARFYPLDSHLPSLVKQLLDSLDAAQGADWQLPGLIEGTAGI AAVLHAVATNTTTAWESALLLDLPPAWPAGDRGAEA
Sequences:
>Translated_436_residues MTVVIDTRVRAATVATRLADALTVPPPPEPDGDRSPSSPRWQGQSLAEGAAGIAVLHGVRARAHAGEWATVDAWLTAAAR EDLSVGPGAGLWFGAPALALALTAAAPPGRHLGAARQLHTAVERLTERRLAAAHARIDAGQRPERAEFDLVRGLTGLGAY LATRNPDGEQLRQILTYLVRLTEPLPATDTAGLAAPGWWTIDVPTTAPPGPFADGHADQGMAHGIAGPLALLALTHRRGV IVPGHTDALDRICHWLDTWRQDGPAGPWWPERITASELLTGRAAQPGPGRASWCYGTPGLARAQQLAAVALADTTRQQRA EAALAACVTDPAQLARFVDPALCHGWAGLVATVRCAAADARFYPLDSHLPSLVKQLLDSLDAAQGADWQLPGLIEGTAGI AAVLHAVATNTTTAWESALLLDLPPAWPAGDRGAEA >Mature_435_residues TVVIDTRVRAATVATRLADALTVPPPPEPDGDRSPSSPRWQGQSLAEGAAGIAVLHGVRARAHAGEWATVDAWLTAAARE DLSVGPGAGLWFGAPALALALTAAAPPGRHLGAARQLHTAVERLTERRLAAAHARIDAGQRPERAEFDLVRGLTGLGAYL ATRNPDGEQLRQILTYLVRLTEPLPATDTAGLAAPGWWTIDVPTTAPPGPFADGHADQGMAHGIAGPLALLALTHRRGVI VPGHTDALDRICHWLDTWRQDGPAGPWWPERITASELLTGRAAQPGPGRASWCYGTPGLARAQQLAAVALADTTRQQRAE AALAACVTDPAQLARFVDPALCHGWAGLVATVRCAAADARFYPLDSHLPSLVKQLLDSLDAAQGADWQLPGLIEGTAGIA AVLHAVATNTTTAWESALLLDLPPAWPAGDRGAEA
Specific function: Could be implicated in the processing or the export process of the subtilin lantibiotic [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.epidermidis epiC and L.lactis nisC [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007822 - InterPro: IPR020452 [H]
Pfam domain/function: PF05147 LANC_like [H]
EC number: NA
Molecular weight: Translated: 45603; Mature: 45472
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVVIDTRVRAATVATRLADALTVPPPPEPDGDRSPSSPRWQGQSLAEGAAGIAVLHGVR CEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ARAHAGEWATVDAWLTAAAREDLSVGPGAGLWFGAPALALALTAAAPPGRHLGAARQLHT HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AVERLTERRLAAAHARIDAGQRPERAEFDLVRGLTGLGAYLATRNPDGEQLRQILTYLVR HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LTEPLPATDTAGLAAPGWWTIDVPTTAPPGPFADGHADQGMAHGIAGPLALLALTHRRGV HCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE IVPGHTDALDRICHWLDTWRQDGPAGPWWPERITASELLTGRAAQPGPGRASWCYGTPGL EECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCH ARAQQLAAVALADTTRQQRAEAALAACVTDPAQLARFVDPALCHGWAGLVATVRCAAADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC RFYPLDSHLPSLVKQLLDSLDAAQGADWQLPGLIEGTAGIAAVLHAVATNTTTAWESALL EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCEEE LDLPPAWPAGDRGAEA EECCCCCCCCCCCCCC >Mature Secondary Structure TVVIDTRVRAATVATRLADALTVPPPPEPDGDRSPSSPRWQGQSLAEGAAGIAVLHGVR EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ARAHAGEWATVDAWLTAAAREDLSVGPGAGLWFGAPALALALTAAAPPGRHLGAARQLHT HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AVERLTERRLAAAHARIDAGQRPERAEFDLVRGLTGLGAYLATRNPDGEQLRQILTYLVR HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LTEPLPATDTAGLAAPGWWTIDVPTTAPPGPFADGHADQGMAHGIAGPLALLALTHRRGV HCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE IVPGHTDALDRICHWLDTWRQDGPAGPWWPERITASELLTGRAAQPGPGRASWCYGTPGL EECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCH ARAQQLAAVALADTTRQQRAEAALAACVTDPAQLARFVDPALCHGWAGLVATVRCAAADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC RFYPLDSHLPSLVKQLLDSLDAAQGADWQLPGLIEGTAGIAAVLHAVATNTTTAWESALL EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCEEE LDLPPAWPAGDRGAEA EECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1539969; 1735728 [H]