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The map label for this gene is rsmD [H]

Identifier: 158312985

GI number: 158312985

Start: 1354912

End: 1355469

Strand: Direct

Name: rsmD [H]

Synonym: Franean1_1133

Alternate gene names: 158312985

Gene position: 1354912-1355469 (Clockwise)

Preceding gene: 158312984

Following gene: 158312986

Centisome position: 15.08

GC content: 74.73

Gene sequence:

>558_bases
ATGACGCGGATCGTCGGCGGGCACGCCGGGGGGCGGCGGCTGGTGGTGCCGCCGGGCGGCGCGACCAGGCCCACCTCCGA
ACGGACGAGGGAGGGCTTGTTCAACACACTCGCGACGCTGGTGGATCTCGCTGGAGCAAGGGTCGCGGACCTGTACGCGG
GCTCCGGCGCGGTCGGGCTCGAGGCGTTGTCCCGCGGCGCGGCGCACGCCCTGCTCGTCGACCGGGACGCGACGGCGGTG
CGCACCCTGCGCCGCAACGCGGAGGCCCTCGGCCTGGCGGGCGCCGAGGTGGTGCGCTCGGCGGTGGAACGGGTCCTGTC
CGCCACCCCGGCCGAGGCCTACGACGTGGTCTTCCTCGATCCGCCCTACGCCCTGCCCGGCGCCGAGCTCGACGGCGTGC
TCGGGCAGCTGGTCGGCGGCGGCTGGCTGGCCCCGGGCGCGGTCTGTGTGGTCGAGCGCGCGTACCGGAGCGGTCCCGTG
ACCTGGCCGGACGGCCTCATAGCACTGCGTGAGCGCAGGTACGGAGAGGGGGTCCTCTGGTACGGTAATCGATCATGA

Upstream 100 bases:

>100_bases
GCGGACCCCGAGCTCGAGGGCCAGCCGGCCCTGCTGCGCCGGCTCACGGCCGCGTTGGACGAGGCCAGCGCGGCCTTCCT
GGAGAAGGGCTGACCTGGCG

Downstream 100 bases:

>100_bases
GGAGGGCAGTCTGTCCCGGATCGTTCGACCCCATCACCAACGGTCACCTCGACATCATCGTCAGAGCGAGCAAGCTCTTC
GACGAGGTCGTCGTCGCCGT

Product: putative methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTRIVGGHAGGRRLVVPPGGATRPTSERTREGLFNTLATLVDLAGARVADLYAGSGAVGLEALSRGAAHALLVDRDATAV
RTLRRNAEALGLAGAEVVRSAVERVLSATPAEAYDVVFLDPPYALPGAELDGVLGQLVGGGWLAPGAVCVVERAYRSGPV
TWPDGLIALRERRYGEGVLWYGNRS

Sequences:

>Translated_185_residues
MTRIVGGHAGGRRLVVPPGGATRPTSERTREGLFNTLATLVDLAGARVADLYAGSGAVGLEALSRGAAHALLVDRDATAV
RTLRRNAEALGLAGAEVVRSAVERVLSATPAEAYDVVFLDPPYALPGAELDGVLGQLVGGGWLAPGAVCVVERAYRSGPV
TWPDGLIALRERRYGEGVLWYGNRS
>Mature_184_residues
TRIVGGHAGGRRLVVPPGGATRPTSERTREGLFNTLATLVDLAGARVADLYAGSGAVGLEALSRGAAHALLVDRDATAVR
TLRRNAEALGLAGAEVVRSAVERVLSATPAEAYDVVFLDPPYALPGAELDGVLGQLVGGGWLAPGAVCVVERAYRSGPVT
WPDGLIALRERRYGEGVLWYGNRS

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=174, Percent_Identity=39.0804597701149, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 19270; Mature: 19139

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIVGGHAGGRRLVVPPGGATRPTSERTREGLFNTLATLVDLAGARVADLYAGSGAVGL
CCEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHH
EALSRGAAHALLVDRDATAVRTLRRNAEALGLAGAEVVRSAVERVLSATPAEAYDVVFLD
HHHHCCCCEEEEEECCHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
PPYALPGAELDGVLGQLVGGGWLAPGAVCVVERAYRSGPVTWPDGLIALRERRYGEGVLW
CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEE
YGNRS
ECCCC
>Mature Secondary Structure 
TRIVGGHAGGRRLVVPPGGATRPTSERTREGLFNTLATLVDLAGARVADLYAGSGAVGL
CEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHH
EALSRGAAHALLVDRDATAVRTLRRNAEALGLAGAEVVRSAVERVLSATPAEAYDVVFLD
HHHHCCCCEEEEEECCHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
PPYALPGAELDGVLGQLVGGGWLAPGAVCVVERAYRSGPVTWPDGLIALRERRYGEGVLW
CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEE
YGNRS
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]