| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158312917
Identifier: 158312917
GI number: 158312917
Start: 1254315
End: 1255673
Strand: Direct
Name: 158312917
Synonym: Franean1_1063
Alternate gene names: NA
Gene position: 1254315-1255673 (Clockwise)
Preceding gene: 158312916
Following gene: 158312918
Centisome position: 13.96
GC content: 76.23
Gene sequence:
>1359_bases ATGCTCGGCCAGGACCGGACGCGTGACCCCGACTGGCTGTGGGAGGAGCTCGGGCTGGGGATCGAGGTGCGCGGCGGCGA ACCGGCCGCGCCCGCGGAGGCGGCCGAGCTGCGCCGGCTCGTCGGGCTGGCGCTGCGCCGTAACCCGCTGCGGGCGCACC TGCTCGTCAGCCGGGTCCTCGGCAAGCACCTGCCGGTGCCGCCGGTTACCGCGCTGGACGCGGCGGCCCGCCTGGCCGAA CGGGTGCGGGCCCTGCCGGCACCCGCCCGGTGGGCCGGCCCCGGGCCGGGGGCGGCCGAGGTCCCGATCGTCATCGGGTA CTGCGAGACCGCCACCGCGCTCGGGCACGCCGTCGCCGACGGCCTGCCGAACAGCCACTACCTGCACACGACGCGGCGCC GGGTACCGGGCAGCACGCCTGTCCTGGAATTCGTCGAGTCGCACTCGCACGCCACCCACCACTGGCTCATGCCCGCCGAT CCCGGTGTGCTGGAAATCCCCGGCCGGCTGCTGCTCGTCGACGACGAGCTGTCGACCGGACGGACGGCGATGGGCACCAT CCGCATCCTGCACGCCTTCGCCCCCCGAACGGACTACGCAGTGGCGGCGCTCGTCGACGCCCGGCCGCCGTCCGCCCGGG CCGCCTTCGACGCCCTCGCCGCCGAGCTCGGCATCCGCCTGGACGTCGTCTCCCTCGTCGCGGCGACCGTCACGGTGCCC GCGGACGTGACGGCCCGGGCCAGCCGGATCCGCGCCGCTTTCGGCGCCCCGACCCCTGCCGAGGGCGGCGGCGACCGTGG CTGCGCGGAGCACCGGGTCACCCGGGTGGCGGTGAGCTGGCCGGCGGGTCTGCCGGACGGGGCACGCCACGGCTGGTCCC CGGCCGCCCGTGAGCGCCTCACCGACGCGGTTCCGGCTGTGGCGAAGGACGTTCTGGCGGGACTGCCCGACCCCGCCCGC GGCGGGGACATCCTGGTCCTGGGTACCGAGGAGTTGATGTACGTGCCGATGCGGCTGGCGGACGGCCTGGCGGAACTGAC CGGGCGCAGGGTGGTCTACCAGTCGACGACCCGCTCCCCGGTCCATCCGCTCGACGTCGACGGCTACGCCATCCGGGCGG CGCTGACCTTCCCGGCGCCCGACGGCCCCGAGCGGGTCAGCCACGTGTACAACGTGACGCCGGGCCGCTACGACGACATC GTGCTCGTCGTGGACTCGGGGATGGACGACCGCGGGCCGGTCCCCGGCGGCCCCGACCTGGACGGCCTGCTCACCGAGCT GCGCCGCTGCGCCGACGTCACCGTCGTCACCATCCCCTGCCACGTGCCGGCGGCGCGCGGCGCCGAGGACGCCCGGTGA
Upstream 100 bases:
>100_bases AACGGCGGGCACGGGCCTTCGGCGTGCTGCGCGAGGGCCTCACCTTCGTCGACGTTCTGGCCGCGACGCAGGACGCGTTG CGGTGACCGGGCAGGATCGG
Downstream 100 bases:
>100_bases GCGCGGTGCGGCCCGTCGCGACCGGCGGGCGAACGCTGATCGGCTCCGGCTCCTACCTGCCCGAGGATGTCACCTTCCTG CTCACCGACCTCAGCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MLGQDRTRDPDWLWEELGLGIEVRGGEPAAPAEAAELRRLVGLALRRNPLRAHLLVSRVLGKHLPVPPVTALDAAARLAE RVRALPAPARWAGPGPGAAEVPIVIGYCETATALGHAVADGLPNSHYLHTTRRRVPGSTPVLEFVESHSHATHHWLMPAD PGVLEIPGRLLLVDDELSTGRTAMGTIRILHAFAPRTDYAVAALVDARPPSARAAFDALAAELGIRLDVVSLVAATVTVP ADVTARASRIRAAFGAPTPAEGGGDRGCAEHRVTRVAVSWPAGLPDGARHGWSPAARERLTDAVPAVAKDVLAGLPDPAR GGDILVLGTEELMYVPMRLADGLAELTGRRVVYQSTTRSPVHPLDVDGYAIRAALTFPAPDGPERVSHVYNVTPGRYDDI VLVVDSGMDDRGPVPGGPDLDGLLTELRRCADVTVVTIPCHVPAARGAEDAR
Sequences:
>Translated_452_residues MLGQDRTRDPDWLWEELGLGIEVRGGEPAAPAEAAELRRLVGLALRRNPLRAHLLVSRVLGKHLPVPPVTALDAAARLAE RVRALPAPARWAGPGPGAAEVPIVIGYCETATALGHAVADGLPNSHYLHTTRRRVPGSTPVLEFVESHSHATHHWLMPAD PGVLEIPGRLLLVDDELSTGRTAMGTIRILHAFAPRTDYAVAALVDARPPSARAAFDALAAELGIRLDVVSLVAATVTVP ADVTARASRIRAAFGAPTPAEGGGDRGCAEHRVTRVAVSWPAGLPDGARHGWSPAARERLTDAVPAVAKDVLAGLPDPAR GGDILVLGTEELMYVPMRLADGLAELTGRRVVYQSTTRSPVHPLDVDGYAIRAALTFPAPDGPERVSHVYNVTPGRYDDI VLVVDSGMDDRGPVPGGPDLDGLLTELRRCADVTVVTIPCHVPAARGAEDAR >Mature_452_residues MLGQDRTRDPDWLWEELGLGIEVRGGEPAAPAEAAELRRLVGLALRRNPLRAHLLVSRVLGKHLPVPPVTALDAAARLAE RVRALPAPARWAGPGPGAAEVPIVIGYCETATALGHAVADGLPNSHYLHTTRRRVPGSTPVLEFVESHSHATHHWLMPAD PGVLEIPGRLLLVDDELSTGRTAMGTIRILHAFAPRTDYAVAALVDARPPSARAAFDALAAELGIRLDVVSLVAATVTVP ADVTARASRIRAAFGAPTPAEGGGDRGCAEHRVTRVAVSWPAGLPDGARHGWSPAARERLTDAVPAVAKDVLAGLPDPAR GGDILVLGTEELMYVPMRLADGLAELTGRRVVYQSTTRSPVHPLDVDGYAIRAALTFPAPDGPERVSHVYNVTPGRYDDI VLVVDSGMDDRGPVPGGPDLDGLLTELRRCADVTVVTIPCHVPAARGAEDAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47777; Mature: 47777
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGQDRTRDPDWLWEELGLGIEVRGGEPAAPAEAAELRRLVGLALRRNPLRAHLLVSRVL CCCCCCCCCHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH GKHLPVPPVTALDAAARLAERVRALPAPARWAGPGPGAAEVPIVIGYCETATALGHAVAD HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC GLPNSHYLHTTRRRVPGSTPVLEFVESHSHATHHWLMPADPGVLEIPGRLLLVDDELSTG CCCCCCEEEHHHHCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEECCCEEEEEECCCCCC RTAMGTIRILHAFAPRTDYAVAALVDARPPSARAAFDALAAELGIRLDVVSLVAATVTVP CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC ADVTARASRIRAAFGAPTPAEGGGDRGCAEHRVTRVAVSWPAGLPDGARHGWSPAARERL CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHH TDAVPAVAKDVLAGLPDPARGGDILVLGTEELMYVPMRLADGLAELTGRRVVYQSTTRSP HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHEEHHHHHHHHHHHHHCCEEEEECCCCCC VHPLDVDGYAIRAALTFPAPDGPERVSHVYNVTPGRYDDIVLVVDSGMDDRGPVPGGPDL CCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCH DGLLTELRRCADVTVVTIPCHVPAARGAEDAR HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MLGQDRTRDPDWLWEELGLGIEVRGGEPAAPAEAAELRRLVGLALRRNPLRAHLLVSRVL CCCCCCCCCHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH GKHLPVPPVTALDAAARLAERVRALPAPARWAGPGPGAAEVPIVIGYCETATALGHAVAD HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHC GLPNSHYLHTTRRRVPGSTPVLEFVESHSHATHHWLMPADPGVLEIPGRLLLVDDELSTG CCCCCCEEEHHHHCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEECCCEEEEEECCCCCC RTAMGTIRILHAFAPRTDYAVAALVDARPPSARAAFDALAAELGIRLDVVSLVAATVTVP CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC ADVTARASRIRAAFGAPTPAEGGGDRGCAEHRVTRVAVSWPAGLPDGARHGWSPAARERL CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHH TDAVPAVAKDVLAGLPDPARGGDILVLGTEELMYVPMRLADGLAELTGRRVVYQSTTRSP HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHEEHHHHHHHHHHHHHCCEEEEECCCCCC VHPLDVDGYAIRAALTFPAPDGPERVSHVYNVTPGRYDDIVLVVDSGMDDRGPVPGGPDL CCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCH DGLLTELRRCADVTVVTIPCHVPAARGAEDAR HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA