Click here to switch to the map view.

The map label for this gene is ybbN [C]

Identifier: 158312902

GI number: 158312902

Start: 1228328

End: 1229323

Strand: Direct

Name: ybbN [C]

Synonym: Franean1_1048

Alternate gene names: 158312902

Gene position: 1228328-1229323 (Clockwise)

Preceding gene: 158312901

Following gene: 158312908

Centisome position: 13.68

GC content: 77.71

Gene sequence:

>996_bases
ATGCAGCGGAGGTCACCTGTCCCACCCGGCTCGCCGCGCAGGGGCGGGCCGGGCAGTATGCCCGACACCCTCGGCGGCCT
ACGGCTCGCCGGTGCGGTTCCCCTAGACCCGAAGCCGGCCCAGCCGCCGGCGCCCCCGGCCGGCCGGGCCGGCCCCGGTG
GCTCTCCCGGCGGCGCGGCGCCCGCCGGTGCCGCCGGCCCGGTCGTGATCGACGTGACCGAGGCGACGTTCGCCGAGGAC
GTCGTGAACCGTTCCATGCAGGTTCCCGTGGTCATCGACTTCTGGGCCGAGTGGTGCGGGCCGTGCAAGCAGCTCAGCCC
CATCCTGGAGCGCCTCGCCGCCGCCGACGGCGGTCGCTGGGTGCTCGCCAAGGTGGACGTCGACGCCAACCCCGGTCTCG
CGCAGGCCGCGGGCGTGCAGGGCATCCCCGCGGTCAAGGCGGTGGTCGGCGGCCGGATCATCGGAGAGTTCACCGGCGCG
GTCCCCGAGCGGGAGGTGCGCGGCTGGCTGGACCAGCTCCTGAGCGTCGTCGGGGAGGCGATGGGCGGGCTGCCGGGGGC
GGGAGCCGAGGGCGGTCCCGCGCTGCCGCCGAACATCGCCGCCGCGGAGGACGCGATGGCCACCGGCGACCTGGACGCGG
CGGCCGCCGCCTACCAGGCCCAGCTCGCCGAGGCCCCCGGGGACGCGGACGCCACCCTCGGCCTGGCCCGGGTGGAGCTG
CTGCGGCGGGTGCGCGGCTACGACCCGGCCTGGCTGCGTCAGCGGCTCTCGGAGAACCCCGACGACATCGAGGCGGCGCT
CGCGGTGGCCGACCTGACCATCGCCCAGGGCGACCCGGCCACCGGCCTGGGCCGCCTCGTCGACCTCGTCCGCCGCACCT
CGGGCGACGACCGGGAGAAGCTGCGGGCGCATCTGGTCGGGCTGTTCCAGGCGCTGGGCGACGGCGAGCCGGCGGTCGCC
CCGGCCCGGCGGGCCCTCGCCGCCGCCCTGTTCTGA

Upstream 100 bases:

>100_bases
CCGGGCGCCGGGTGTCCGGGTGTTGCCACCGGGGTGACCACGCGCGGAAAAGTGGCCCGGGGGCGTCCTGACCGCGACCG
TCGGGTGTAACGATGGAGAC

Downstream 100 bases:

>100_bases
GTACGCCTGCCTGACACCGCTGTCACCGCGGAGCCGCGGTGTGCCGCCGGGGTGGCCGGTCCTCGTCGGACTCGGCCTCC
CGGCGGGGCCCGGCTGTCAG

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQRRSPVPPGSPRRGGPGSMPDTLGGLRLAGAVPLDPKPAQPPAPPAGRAGPGGSPGGAAPAGAAGPVVIDVTEATFAED
VVNRSMQVPVVIDFWAEWCGPCKQLSPILERLAAADGGRWVLAKVDVDANPGLAQAAGVQGIPAVKAVVGGRIIGEFTGA
VPEREVRGWLDQLLSVVGEAMGGLPGAGAEGGPALPPNIAAAEDAMATGDLDAAAAAYQAQLAEAPGDADATLGLARVEL
LRRVRGYDPAWLRQRLSENPDDIEAALAVADLTIAQGDPATGLGRLVDLVRRTSGDDREKLRAHLVGLFQALGDGEPAVA
PARRALAAALF

Sequences:

>Translated_331_residues
MQRRSPVPPGSPRRGGPGSMPDTLGGLRLAGAVPLDPKPAQPPAPPAGRAGPGGSPGGAAPAGAAGPVVIDVTEATFAED
VVNRSMQVPVVIDFWAEWCGPCKQLSPILERLAAADGGRWVLAKVDVDANPGLAQAAGVQGIPAVKAVVGGRIIGEFTGA
VPEREVRGWLDQLLSVVGEAMGGLPGAGAEGGPALPPNIAAAEDAMATGDLDAAAAAYQAQLAEAPGDADATLGLARVEL
LRRVRGYDPAWLRQRLSENPDDIEAALAVADLTIAQGDPATGLGRLVDLVRRTSGDDREKLRAHLVGLFQALGDGEPAVA
PARRALAAALF
>Mature_331_residues
MQRRSPVPPGSPRRGGPGSMPDTLGGLRLAGAVPLDPKPAQPPAPPAGRAGPGGSPGGAAPAGAAGPVVIDVTEATFAED
VVNRSMQVPVVIDFWAEWCGPCKQLSPILERLAAADGGRWVLAKVDVDANPGLAQAAGVQGIPAVKAVVGGRIIGEFTGA
VPEREVRGWLDQLLSVVGEAMGGLPGAGAEGGPALPPNIAAAEDAMATGDLDAAAAAYQAQLAEAPGDADATLGLARVEL
LRRVRGYDPAWLRQRLSENPDDIEAALAVADLTIAQGDPATGLGRLVDLVRRTSGDDREKLRAHLVGLFQALGDGEPAVA
PARRALAAALF

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=161, Percent_Identity=35.4037267080745, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI87081747, Length=286, Percent_Identity=29.020979020979, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082331, Length=107, Percent_Identity=35.5140186915888, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788936, Length=87, Percent_Identity=37.9310344827586, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI212646193, Length=112, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28573567, Length=125, Percent_Identity=32.8, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33536; Mature: 33536

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRSPVPPGSPRRGGPGSMPDTLGGLRLAGAVPLDPKPAQPPAPPAGRAGPGGSPGGAA
CCCCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGAAGPVVIDVTEATFAEDVVNRSMQVPVVIDFWAEWCGPCKQLSPILERLAAADGGRW
CCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
VLAKVDVDANPGLAQAAGVQGIPAVKAVVGGRIIGEFTGAVPEREVRGWLDQLLSVVGEA
EEEEEECCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
MGGLPGAGAEGGPALPPNIAAAEDAMATGDLDAAAAAYQAQLAEAPGDADATLGLARVEL
HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRRVRGYDPAWLRQRLSENPDDIEAALAVADLTIAQGDPATGLGRLVDLVRRTSGDDREK
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCHHHH
LRAHLVGLFQALGDGEPAVAPARRALAAALF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQRRSPVPPGSPRRGGPGSMPDTLGGLRLAGAVPLDPKPAQPPAPPAGRAGPGGSPGGAA
CCCCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGAAGPVVIDVTEATFAEDVVNRSMQVPVVIDFWAEWCGPCKQLSPILERLAAADGGRW
CCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
VLAKVDVDANPGLAQAAGVQGIPAVKAVVGGRIIGEFTGAVPEREVRGWLDQLLSVVGEA
EEEEEECCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
MGGLPGAGAEGGPALPPNIAAAEDAMATGDLDAAAAAYQAQLAEAPGDADATLGLARVEL
HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRRVRGYDPAWLRQRLSENPDDIEAALAVADLTIAQGDPATGLGRLVDLVRRTSGDDREK
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCHHHH
LRAHLVGLFQALGDGEPAVAPARRALAAALF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]