| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312901
Identifier: 158312901
GI number: 158312901
Start: 1227929
End: 1228225
Strand: Direct
Name: 158312901
Synonym: Franean1_1047
Alternate gene names: NA
Gene position: 1227929-1228225 (Clockwise)
Preceding gene: 158312899
Following gene: 158312902
Centisome position: 13.67
GC content: 69.02
Gene sequence:
>297_bases ATGCTTGTTGCCTTCAGCGTCACTCCTATCGGTCTCGGCGAGGACGTCTCGGCTCCGGTGGCCGAAGCGGTCCGGGTCGT GCGTGACTCCGGCCTGCCGAACGAGACCAACGCGATGTTCACGATCATCGAGGGCGAGTGGGCCGAGGTGATGGACGTCG TACGGCGGGCCACCGAGGCCGTGGCGGCCCGGTGTGGACGGGTGAGCCTGGTGCTCAAGGCTGATCTGCGTGAGGGCGTG AGCGACGCGCTGCACGCCAAGGTCGCCAGCGTCGAGCGCCACCTGGCCGGCGGCTGA
Upstream 100 bases:
>100_bases AAATGGCTCTCCGGTCGGGTGGGGCACCCATGGCTCGACTCCGCGTGGAGCCAGCACAGACCTCCGTGTCCGCAGCGCGA GGCGTGGTAGGCCTGTCCAC
Downstream 100 bases:
>100_bases GGCCGGGCGCCGGGTGTCCGGGTGTTGCCACCGGGGTGACCACGCGCGGAAAAGTGGCCCGGGGGCGTCCTGACCGCGAC CGTCGGGTGTAACGATGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 98; Mature: 98
Protein sequence:
>98_residues MLVAFSVTPIGLGEDVSAPVAEAVRVVRDSGLPNETNAMFTIIEGEWAEVMDVVRRATEAVAARCGRVSLVLKADLREGV SDALHAKVASVERHLAGG
Sequences:
>Translated_98_residues MLVAFSVTPIGLGEDVSAPVAEAVRVVRDSGLPNETNAMFTIIEGEWAEVMDVVRRATEAVAARCGRVSLVLKADLREGV SDALHAKVASVERHLAGG >Mature_98_residues MLVAFSVTPIGLGEDVSAPVAEAVRVVRDSGLPNETNAMFTIIEGEWAEVMDVVRRATEAVAARCGRVSLVLKADLREGV SDALHAKVASVERHLAGG
Specific function: Unknown
COG id: COG0011
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0045 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002767 - InterPro: IPR016198 [H]
Pfam domain/function: PF01910 DUF77 [H]
EC number: NA
Molecular weight: Translated: 10313; Mature: 10313
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVAFSVTPIGLGEDVSAPVAEAVRVVRDSGLPNETNAMFTIIEGEWAEVMDVVRRATEA CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH VAARCGRVSLVLKADLREGVSDALHAKVASVERHLAGG HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLVAFSVTPIGLGEDVSAPVAEAVRVVRDSGLPNETNAMFTIIEGEWAEVMDVVRRATEA CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH VAARCGRVSLVLKADLREGVSDALHAKVASVERHLAGG HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]