| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is hemK [H]
Identifier: 158312865
GI number: 158312865
Start: 1193479
End: 1194483
Strand: Direct
Name: hemK [H]
Synonym: Franean1_1011
Alternate gene names: 158312865
Gene position: 1193479-1194483 (Clockwise)
Preceding gene: 158312864
Following gene: 158312866
Centisome position: 13.29
GC content: 76.12
Gene sequence:
>1005_bases GTGACAGGCCCGGCCGCGTCCACGACGCGGGCCGACCACGCGGACGCCACGCTCGCCGTCGAGCTCGCCGCCGCGACGGC CCGGCTGGCCGCGGCCGGTGTCGCCAGCCCCCGCGGCGACGCCGAGCAGCTGGCGGCGCACGTGCTCGGGGTGTCGCGCG GCCGGCTCGCGCTGGTCACCCGGGTCGAACCGGCCGCGGCCGGCGAGCTGCGCGCGCTGGTGGAACGGCGGGCGAGCCGG GTCCCACTGCAGCACCTGACCGGCCTCGCCGGCTTCCGCCACCTGGACATCGCCGTCGGGCCCGGAGTGTTCATCCCCCG CCCGGAGACCGAGTGGGTGGCCGAGTGGGCGATCGCGGCCCTGCGATCGCCCGACGCGGTCGTGGCTGGACGTCCAATCT GTGTTGATCTTTGTGCGGGTTCGGGGGCGATCGCCCTGTCGGTGGCCGACGAGGTGCCGAACGCCGAGGTGCACGCGGTG GAGCTGGAGCCGGCGGCGCTCGGCTGGCTGCGCCGCAACGTCGAGCGCACGGGCCTGCCGGTGCGGGTGCACCAGGCCGA CGTCGGCATCCCGCGGTCGCCAACAGACGCGGGCAGGCCGGTCGCGCCGGTCGGCACGGTCCTGACTGACCTCGCGGGAC GGGCCGACGTCGTCATCAGCAACCCGCCGTATCTGCCCGATCATGAACGGCCGAGGGTCGAGCCCGAGGTCGGCCGGCAC GACCCGCCAGCGGCCCTGTGGGGCGGGCCCGACGGCCTGGACGGGCCGCGCGCGGTCGTGGCCGCCGCCGGGGGACTCTT GCGGCCAGGCGGTTTACTGGTCATGGAACACGCGGACGGACATGGCCAGACGGTGCCCGCGCTGCTCGCCGGTGAGGGCT GGTGGGCTGGTTCGTGGTCCGAAATCGTGGATCATCCCGATCTCGCCGGGCGGGACCGGTTCGTCACCGCCCGCTGGAAC CCGCCGGGGCCGCGCCCGCCGCGCGGCGCCGGAGAGGACGTGTGA
Upstream 100 bases:
>100_bases ACAAGGCGCACAACCTGGAGGCCGTGCTGGACGGCGACCTCGACGCCGTGATCGAGGCCCTGACCGAGGCGGACCTGGAA TCCCGGATGGCGGCCACGCC
Downstream 100 bases:
>100_bases TGCAGGTTTTCGACTGCTCCGACGAGGGGCAGCGCAAGGCAGGGCTGGACGCCGCCACCGACGCGGTGGGCCGCGGCAAG CTCGTCGTGCTGCCGACCGA
Product: HemK family modification methylase
Products: NA
Alternate protein names: M.MtuHHemKP [H]
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MTGPAASTTRADHADATLAVELAAATARLAAAGVASPRGDAEQLAAHVLGVSRGRLALVTRVEPAAAGELRALVERRASR VPLQHLTGLAGFRHLDIAVGPGVFIPRPETEWVAEWAIAALRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAV ELEPAALGWLRRNVERTGLPVRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPPYLPDHERPRVEPEVGRH DPPAALWGGPDGLDGPRAVVAAAGGLLRPGGLLVMEHADGHGQTVPALLAGEGWWAGSWSEIVDHPDLAGRDRFVTARWN PPGPRPPRGAGEDV
Sequences:
>Translated_334_residues MTGPAASTTRADHADATLAVELAAATARLAAAGVASPRGDAEQLAAHVLGVSRGRLALVTRVEPAAAGELRALVERRASR VPLQHLTGLAGFRHLDIAVGPGVFIPRPETEWVAEWAIAALRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAV ELEPAALGWLRRNVERTGLPVRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPPYLPDHERPRVEPEVGRH DPPAALWGGPDGLDGPRAVVAAAGGLLRPGGLLVMEHADGHGQTVPALLAGEGWWAGSWSEIVDHPDLAGRDRFVTARWN PPGPRPPRGAGEDV >Mature_333_residues TGPAASTTRADHADATLAVELAAATARLAAAGVASPRGDAEQLAAHVLGVSRGRLALVTRVEPAAAGELRALVERRASRV PLQHLTGLAGFRHLDIAVGPGVFIPRPETEWVAEWAIAALRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAVE LEPAALGWLRRNVERTGLPVRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPPYLPDHERPRVEPEVGRHD PPAALWGGPDGLDGPRAVVAAAGGLLRPGGLLVMEHADGHGQTVPALLAGEGWWAGSWSEIVDHPDLAGRDRFVTARWNP PGPRPPRGAGEDV
Specific function: Probable protein methyltransferase. May methylate a Gln residue in target proteins [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hemK family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=309, Percent_Identity=30.7443365695793, Blast_Score=108, Evalue=5e-24, Organism=Escherichia coli, GI1787463, Length=270, Percent_Identity=31.4814814814815, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87082085, Length=206, Percent_Identity=30.5825242718447, Blast_Score=79, Evalue=3e-16, Organism=Drosophila melanogaster, GI24582226, Length=309, Percent_Identity=30.0970873786408, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 [H]
Pfam domain/function: PF05175 MTS [H]
EC number: 2.1.1.-
Molecular weight: Translated: 34620; Mature: 34489
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPAASTTRADHADATLAVELAAATARLAAAGVASPRGDAEQLAAHVLGVSRGRLALVT CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE RVEPAAAGELRALVERRASRVPLQHLTGLAGFRHLDIAVGPGVFIPRPETEWVAEWAIAA ECCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCEECCCCCHHHHHHHHHHH LRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAVELEPAALGWLRRNVERTGLP HCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCC VRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPPYLPDHERPRVEPEVGRH EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC DPPAALWGGPDGLDGPRAVVAAAGGLLRPGGLLVMEHADGHGQTVPALLAGEGWWAGSWS CCCCEECCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCHH EIVDHPDLAGRDRFVTARWNPPGPRPPRGAGEDV HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure TGPAASTTRADHADATLAVELAAATARLAAAGVASPRGDAEQLAAHVLGVSRGRLALVT CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE RVEPAAAGELRALVERRASRVPLQHLTGLAGFRHLDIAVGPGVFIPRPETEWVAEWAIAA ECCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCEECCCCCHHHHHHHHHHH LRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAVELEPAALGWLRRNVERTGLP HCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCC VRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPPYLPDHERPRVEPEVGRH EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC DPPAALWGGPDGLDGPRAVVAAAGGLLRPGGLLVMEHADGHGQTVPALLAGEGWWAGSWS CCCCEECCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCHH EIVDHPDLAGRDRFVTARWNPPGPRPPRGAGEDV HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]