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The map label for this gene is yrdC [C]

Identifier: 158312866

GI number: 158312866

Start: 1194483

End: 1195133

Strand: Direct

Name: yrdC [C]

Synonym: Franean1_1012

Alternate gene names: 158312866

Gene position: 1194483-1195133 (Clockwise)

Preceding gene: 158312865

Following gene: 158312867

Centisome position: 13.3

GC content: 74.35

Gene sequence:

>651_bases
ATGCAGGTTTTCGACTGCTCCGACGAGGGGCAGCGCAAGGCAGGGCTGGACGCCGCCACCGACGCGGTGGGCCGCGGCAA
GCTCGTCGTGCTGCCGACCGACACCCTCTACGGGATCGGCGCCGACGCGTTCAACCGGGACGCCGTCACCGCGCTGCTCG
CGGCGAAGGGGCGCGGGCGGAACATGCCGGTGCCCGTGCTGGTCGGCTCGTGGCGGACCCTCGACGGCCTGGCCGAGCAG
GTCACGGGGCACATCCGGGATCTCGTCCGGGCGTTCTGGCCCGGTGGGCTGACGCTGGTCGTCAACCACGCACCGTCCCT
GCGCTGGGATCTCGGCGACGCCCGGGGGACGGTCGCCGTCCGCATGCCGCTGCACCCGGTGGCCATCGAGCTGCTCGGGC
GCACGGGGCCGATGGCCGTCTCCAGCGCCAACATCAGCGGACGTCCGCCGGCGACGAGCGCCGTCGACGCGGTGGCGCAG
CTCGGAGGTGCCGCCGCGGTCTACCTGGACGGCGGGACCACGCCGGTGGGCACCGCGTCGACGATCGTGGACTGCACGGG
GCCGGTTCCCACTGTGGTCCGTGAGGGGGCGGTCGACCTCGCGGCACTGCGTTCGGTGCTGCCCCTCGTGCGGGAACCGG
CCGCCCGCTGA

Upstream 100 bases:

>100_bases
TCGTGGATCATCCCGATCTCGCCGGGCGGGACCGGTTCGTCACCGCCCGCTGGAACCCGCCGGGGCCGCGCCCGCCGCGC
GGCGCCGGAGAGGACGTGTG

Downstream 100 bases:

>100_bases
CCTGCGCGCGGACCGCTGTGCGCCGCCCGCTGACCTGCGCGGGCCGGCCGCCGTCCCGGGCCGGCCGCCGGCTGGGCCCC
GCGCGAGCCGGCGGCTGAGC

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGRNMPVPVLVGSWRTLDGLAEQ
VTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAVRMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAVAQ
LGGAAAVYLDGGTTPVGTASTIVDCTGPVPTVVREGAVDLAALRSVLPLVREPAAR

Sequences:

>Translated_216_residues
MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGRNMPVPVLVGSWRTLDGLAEQ
VTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAVRMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAVAQ
LGGAAAVYLDGGTTPVGTASTIVDCTGPVPTVVREGAVDLAALRSVLPLVREPAAR
>Mature_216_residues
MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGRNMPVPVLVGSWRTLDGLAEQ
VTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAVRMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAVAQ
LGGAAAVYLDGGTTPVGTASTIVDCTGPVPTVVREGAVDLAALRSVLPLVREPAAR

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=161, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=176, Percent_Identity=31.25, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=186, Percent_Identity=32.7956989247312, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI78707274, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22201; Mature: 22201

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR
CCEECCCCCCCHHCCCCHHHHHCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHCCCCC
NMPVPVLVGSWRTLDGLAEQVTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAV
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEEE
RMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAVAQLGGAAAVYLDGGTTPVGTAS
EECCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCH
TIVDCTGPVPTVVREGAVDLAALRSVLPLVREPAAR
HEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR
CCEECCCCCCCHHCCCCHHHHHCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHCCCCC
NMPVPVLVGSWRTLDGLAEQVTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAV
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEEE
RMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAVAQLGGAAAVYLDGGTTPVGTAS
EECCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCH
TIVDCTGPVPTVVREGAVDLAALRSVLPLVREPAAR
HEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]