| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is mlc [C]
Identifier: 158312574
GI number: 158312574
Start: 835419
End: 836708
Strand: Direct
Name: mlc [C]
Synonym: Franean1_0718
Alternate gene names: 158312574
Gene position: 835419-836708 (Clockwise)
Preceding gene: 158312573
Following gene: 158312576
Centisome position: 9.3
GC content: 75.12
Gene sequence:
>1290_bases GTGCCCATCCGGAGCGCGAACCCGCCCACCATCTCGCCGACCGGCCTCGCCGGGCCCGGAAACGATCGCAGGGACACCTC GAAAGGCGCCGGATCGGCGGCGGCCGTGCTACGCGCCGTCCTCGATCACGGGCCCGTCGCGAGGGGGTTCATCGGCACCG CGACGGGTCTCAGCCCGGCCGCGGTCTCACGGCAGACCGCCGACCTCATCTCGCTCGGGCTGCTGCGGGAGCTGCCGGTC GCTGCCGGCGCGCCGCGGGCGGGGCGGCCGAGCGTGCCGCTCGACGTCGACACCGACACCCACCTCGCCTGCGGCGTGCA CATCGCCGTCCCCATGCTCACCTTCGGAATCGTCGACCTGCGGGGCCGGGTGGTCGCCCGCGAGGAGTTGCCGCACCGGG GCGAGGCCGACGACACGCTCTCGACCATCGTTCGGCACCTGCCCGGATTCCTGCGCCGGCACGCCGGCCACCGCCGGGTC CTCGGACTCGGCGTGGTCACGGGCGGCCACGTCGACGCACGGACCGGCGTCGTGGTCGAACACGAGCCGCTGGGCTGGCG GGACCTGCCGTTGGGCCCGCTGCTGGCCGCCCGCACCGGCCTCCCGGTGAGCGTGGACGGCCATGCCCGTGCGCTGGCTC AGGCGGAGATCCTCTTCGGTGAGCCGCGGGCCCGGGCAAGCCTGGTGCACCTGTTCGTGGGCCATGTGGTGGACGCGGCC ATAGCCACAGACGGAGTCGTGCATCACGGCCTTCGCTCGGCGGCGGGCGGGGTGGCGCACCTGAACCTGCCCGGGGCCGA CCTGCCGTGCTCCTGCGGCGGCCGGGGCTGCGCCCAGACCGCGCTGTCGGACCGCGCGCTGCTCGTGAAGGCCGTCGAGC TCGGAGCCATACCGCGACCGGAGGCCGAGCTCCTGCTGGGGGCGGCCCGTGCCGGCGACGACCTCGTGGTGGGACTGCTG CGCCAACGGCTGCGGGGGGTCGCCAGGATCGCCGCGACGCTGCTCGACATGCTGGACCCGGAGCTCCTCGTCCTGACCGA GATGTCCGCGATCTACCTGCCGCACCTGCTCCCGGACCTGTACGAGGAGATCGCCCGGCTCTCGCGCGCGTGCGGGGACC CGGAGCGGGTCGTGCGCCCCAGCAGCTTCGGGACGGACGTGCTCGCCGTCGCCGCGGCGGCGACCGTGCTCGACTCGGTG CACCGCAGCCCGCGCACGGTGCACACCCGCCGTGACCGGCAGGCCGCCAGGGCGGCCGAGTGGTCACGACCCCCGGTAGC GGCTCCGTAA
Upstream 100 bases:
>100_bases CATCCGCGTACTCCCGCCGCCGGTGCGGGAGGCGCCCCACCGTGCAGGCCTTTGACGGTCGTCGACCCGGTGGGTCGACA CGCGCGTGAGGAGGATTTCC
Downstream 100 bases:
>100_bases TATTTCCATCCGATCGGAAATCATTGACCTGGCGAATTAACCGAGCAACGATGGAATTGTGAAGGACGCCGCCGGGCAGC GCCCCGTGGGAACTCGGGGG
Product: ROK family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MPIRSANPPTISPTGLAGPGNDRRDTSKGAGSAAAVLRAVLDHGPVARGFIGTATGLSPAAVSRQTADLISLGLLRELPV AAGAPRAGRPSVPLDVDTDTHLACGVHIAVPMLTFGIVDLRGRVVAREELPHRGEADDTLSTIVRHLPGFLRRHAGHRRV LGLGVVTGGHVDARTGVVVEHEPLGWRDLPLGPLLAARTGLPVSVDGHARALAQAEILFGEPRARASLVHLFVGHVVDAA IATDGVVHHGLRSAAGGVAHLNLPGADLPCSCGGRGCAQTALSDRALLVKAVELGAIPRPEAELLLGAARAGDDLVVGLL RQRLRGVARIAATLLDMLDPELLVLTEMSAIYLPHLLPDLYEEIARLSRACGDPERVVRPSSFGTDVLAVAAAATVLDSV HRSPRTVHTRRDRQAARAAEWSRPPVAAP
Sequences:
>Translated_429_residues MPIRSANPPTISPTGLAGPGNDRRDTSKGAGSAAAVLRAVLDHGPVARGFIGTATGLSPAAVSRQTADLISLGLLRELPV AAGAPRAGRPSVPLDVDTDTHLACGVHIAVPMLTFGIVDLRGRVVAREELPHRGEADDTLSTIVRHLPGFLRRHAGHRRV LGLGVVTGGHVDARTGVVVEHEPLGWRDLPLGPLLAARTGLPVSVDGHARALAQAEILFGEPRARASLVHLFVGHVVDAA IATDGVVHHGLRSAAGGVAHLNLPGADLPCSCGGRGCAQTALSDRALLVKAVELGAIPRPEAELLLGAARAGDDLVVGLL RQRLRGVARIAATLLDMLDPELLVLTEMSAIYLPHLLPDLYEEIARLSRACGDPERVVRPSSFGTDVLAVAAAATVLDSV HRSPRTVHTRRDRQAARAAEWSRPPVAAP >Mature_428_residues PIRSANPPTISPTGLAGPGNDRRDTSKGAGSAAAVLRAVLDHGPVARGFIGTATGLSPAAVSRQTADLISLGLLRELPVA AGAPRAGRPSVPLDVDTDTHLACGVHIAVPMLTFGIVDLRGRVVAREELPHRGEADDTLSTIVRHLPGFLRRHAGHRRVL GLGVVTGGHVDARTGVVVEHEPLGWRDLPLGPLLAARTGLPVSVDGHARALAQAEILFGEPRARASLVHLFVGHVVDAAI ATDGVVHHGLRSAAGGVAHLNLPGADLPCSCGGRGCAQTALSDRALLVKAVELGAIPRPEAELLLGAARAGDDLVVGLLR QRLRGVARIAATLLDMLDPELLVLTEMSAIYLPHLLPDLYEEIARLSRACGDPERVVRPSSFGTDVLAVAAAATVLDSVH RSPRTVHTRRDRQAARAAEWSRPPVAAP
Specific function: May Be A Regulator In Specific Sugar Metabolism. May Influence The Rate Of Glucose Uptake Or Glycolysis In Cells In The Rich Medium. [C]
COG id: COG1940
COG function: function code KG; Transcriptional regulator/sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI298566325, Length=297, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI298566315, Length=297, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI190014632, Length=224, Percent_Identity=29.4642857142857, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI4885285, Length=224, Percent_Identity=29.4642857142857, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1787878, Length=332, Percent_Identity=26.8072289156627, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1786891, Length=361, Percent_Identity=26.0387811634349, Blast_Score=92, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000600 [H]
Pfam domain/function: PF00480 ROK [H]
EC number: NA
Molecular weight: Translated: 44741; Mature: 44610
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIRSANPPTISPTGLAGPGNDRRDTSKGAGSAAAVLRAVLDHGPVARGFIGTATGLSPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH AVSRQTADLISLGLLRELPVAAGAPRAGRPSVPLDVDTDTHLACGVHIAVPMLTFGIVDL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH RGRVVAREELPHRGEADDTLSTIVRHLPGFLRRHAGHRRVLGLGVVTGGHVDARTGVVVE CCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEE HEPLGWRDLPLGPLLAARTGLPVSVDGHARALAQAEILFGEPRARASLVHLFVGHVVDAA CCCCCCCCCCCCHHHHHCCCCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IATDGVVHHGLRSAAGGVAHLNLPGADLPCSCGGRGCAQTALSDRALLVKAVELGAIPRP HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC EAELLLGAARAGDDLVVGLLRQRLRGVARIAATLLDMLDPELLVLTEMSAIYLPHLLPDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH YEEIARLSRACGDPERVVRPSSFGTDVLAVAAAATVLDSVHRSPRTVHTRRDRQAARAAE HHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH WSRPPVAAP CCCCCCCCC >Mature Secondary Structure PIRSANPPTISPTGLAGPGNDRRDTSKGAGSAAAVLRAVLDHGPVARGFIGTATGLSPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH AVSRQTADLISLGLLRELPVAAGAPRAGRPSVPLDVDTDTHLACGVHIAVPMLTFGIVDL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH RGRVVAREELPHRGEADDTLSTIVRHLPGFLRRHAGHRRVLGLGVVTGGHVDARTGVVVE CCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEE HEPLGWRDLPLGPLLAARTGLPVSVDGHARALAQAEILFGEPRARASLVHLFVGHVVDAA CCCCCCCCCCCCHHHHHCCCCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IATDGVVHHGLRSAAGGVAHLNLPGADLPCSCGGRGCAQTALSDRALLVKAVELGAIPRP HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC EAELLLGAARAGDDLVVGLLRQRLRGVARIAATLLDMLDPELLVLTEMSAIYLPHLLPDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH YEEIARLSRACGDPERVVRPSSFGTDVLAVAAAATVLDSVHRSPRTVHTRRDRQAARAAE HHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH WSRPPVAAP CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]