| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ddn [H]
Identifier: 158312480
GI number: 158312480
Start: 723779
End: 724213
Strand: Direct
Name: ddn [H]
Synonym: Franean1_0623
Alternate gene names: 158312480
Gene position: 723779-724213 (Clockwise)
Preceding gene: 158312479
Following gene: 158312481
Centisome position: 8.06
GC content: 70.11
Gene sequence:
>435_bases ATGAGCGAGACCGGCTACACCGCCCCGGACCTGAGTCTGCGCGGGGCCGAGCACATCGCGCGTTACCGGGAGACCGACGG TGAGGTCGGCTACCTCTGGAACGGTGTGCCGACCCTGCTGCTGACCACGGTCGGCCGGCAGTCAGGCGAGAAGCGCACCT CCGCCCTGATCTTCGCGCGGGACGGGGACGACTACCTCGTCGTGGCGTCCACCGGCGGAGCGCCGAAACACCCGGCCTGG TACTGGAACCTGACGGCGCGTCCCGAGGCCGAGATCCAGGTCCGTGGCCTGCACCTGCCGGTGGTGGGCCGGACGGCGTC CGAGGACGAGAAGCCCCGGCTCTGGAAGATCGTGACCGCGAGCTGGCCCAACTACGACGTGTACCAGACCCGCACGGACC GGGTCATCCCGGTCGTCGTCCTCACCCCGTCCTGA
Upstream 100 bases:
>100_bases CGCGAGGCACCCCGCTTCATCGGCATGTACGAGCGAGGCGCGACCGAGATCCCCGTCGTCTTCGGGTGACCCCGAGACCT CGGGGGTGAGGAGACATCCC
Downstream 100 bases:
>100_bases GAAGCCGGCCTGCTGCCGCGACCGCGATGAAAGGAGCAGTACGGATGAGCGTCGCACCGGTCTTCTCCAAGGGCCGCGAC CTCGACGCCACGGTCGAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSETGYTAPDLSLRGAEHIARYRETDGEVGYLWNGVPTLLLTTVGRQSGEKRTSALIFARDGDDYLVVASTGGAPKHPAW YWNLTARPEAEIQVRGLHLPVVGRTASEDEKPRLWKIVTASWPNYDVYQTRTDRVIPVVVLTPS
Sequences:
>Translated_144_residues MSETGYTAPDLSLRGAEHIARYRETDGEVGYLWNGVPTLLLTTVGRQSGEKRTSALIFARDGDDYLVVASTGGAPKHPAW YWNLTARPEAEIQVRGLHLPVVGRTASEDEKPRLWKIVTASWPNYDVYQTRTDRVIPVVVLTPS >Mature_143_residues SETGYTAPDLSLRGAEHIARYRETDGEVGYLWNGVPTLLLTTVGRQSGEKRTSALIFARDGDDYLVVASTGGAPKHPAWY WNLTARPEAEIQVRGLHLPVVGRTASEDEKPRLWKIVTASWPNYDVYQTRTDRVIPVVVLTPS
Specific function: Nitroreductase involved in the bioreductive activation of the antitubercular prodrug PA-824 (nitroimidazo-oxazine) developed for anti-tuberculosis therapy against both replicating and persistent bacteria. It converts PA-824 into three primary metabolites;
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the deazaflavin-dependent nitroreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012349 - InterPro: IPR009002 - InterPro: IPR004378 [H]
Pfam domain/function: PF04075 DUF385 [H]
EC number: NA
Molecular weight: Translated: 16023; Mature: 15892
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETGYTAPDLSLRGAEHIARYRETDGEVGYLWNGVPTLLLTTVGRQSGEKRTSALIFAR CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHEEHHHCCCCCCCCCEEEEEEEE DGDDYLVVASTGGAPKHPAWYWNLTARPEAEIQVRGLHLPVVGRTASEDEKPRLWKIVTA CCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEE SWPNYDVYQTRTDRVIPVVVLTPS CCCCCCEEEECCCCEEEEEEECCC >Mature Secondary Structure SETGYTAPDLSLRGAEHIARYRETDGEVGYLWNGVPTLLLTTVGRQSGEKRTSALIFAR CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHEEHHHCCCCCCCCCEEEEEEEE DGDDYLVVASTGGAPKHPAWYWNLTARPEAEIQVRGLHLPVVGRTASEDEKPRLWKIVTA CCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEE SWPNYDVYQTRTDRVIPVVVLTPS CCCCCCEEEECCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]