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The map label for this gene is yfdE [H]

Identifier: 158312472

GI number: 158312472

Start: 715666

End: 716901

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_0615

Alternate gene names: 158312472

Gene position: 715666-716901 (Clockwise)

Preceding gene: 158312469

Following gene: 158312473

Centisome position: 7.97

GC content: 73.06

Gene sequence:

>1236_bases
ATGGGGTGGCCGATGGAGGACAGCGCTTCAGAGGGCGCGTTCAAGGGCGTGCGGGTCGTCGAGCTCGCCCAGTGGGTCTT
CGTGCCCGTGGCCGGCGCGCTCCTGGCTGACTGGGGCGCGGACGTCATCAGGGTCGAGCGCCCGGAGGGCGACCCGTACC
GGGCGCTGGCGACACAGGGGATCGGGACCGACGGCGGCGGGGTGAACCTCTCGGTGGCCCTGGCCAACCGGGGCAAGCGC
TCGGTCGCGCTCGACCTGCGCGGCGAGCAGGGCAAGGCGATCCTCCACAAGATGCTGGAGACGGCGGACGTCTTCCTCAC
CAACTTCCGGCCGGGCGCGCTGCGCCGGCTGGGGCTCGACGCCGACGAGCTCACCCGCCGGTACCCCCGGCTGGTCTACG
CCCGCGGGCACGGCTTCGGTGCCCGCGGGCCTGACGCCGACCATCCCGGCTACGACTCCTCGGCGTTCTGGGCCCGCGGC
GGGATGGGGTACACGCTGACCCCCGAGGAGCGGGAGTACCCGATCAGCCAGCGGGGCGCGATGGGCGACCGCAACGGCGC
GATGGCGCTGGCCTTCGGCATCGCCGCCGCCCTGCTGGGTCGCACTCGCACAGGAAGGGGGACAGTCGTCGACGTCTCCC
TGCTCGCGACGGCCATGTGGACGCTGTCCTCCGACCTCCTCGTCGCGCTGACCGGGCAGGCCCCGCGCATCTCCAGCGGC
CCCGGTGACGGCCCGAACCCGCTCGTGGGCGCCTACCGGACGAAGGACGGCCGGCACATCCAGCTCGTCTTCCTCGAGTC
CGACCGCTACTGGGCGCCGTTCTGCGAGCTGATCGGGCGCGGTGACCTCGTCGCCGACCCGCGGTTCGCCGACCTGCGGG
CCCGCGGTGAGAACCGGGTCGCCTGCCGGGCCGAGCTCGAGGCGGCGTTCGCGACCCGGACCTTCGAGGAGTGGAAGGAC
CTGCTCGCGGGCATCGACGCACCGTGGGCCCCGGTGCAGTCCGTCCTGGAGCTGGTCGACGACCCGCAGGTGGTGGCGAA
CGGCTACGTCGGCGAGGTGCAGCTCGACGGCGGCGGCTCCTACCGATTACCAACTGTCCCCGTCCAGTTCGACTCCCAGC
CCCCCGTGCCCCGGCGGGCTCCCGAGCACGGCGAGCACACCGAGTCCGTGCTGCTCGAGCTCGGCTACACCTGGGAAGAG
ATAGCCGCCCTCACCGAGGCCGGAGCGATCCCGTGA

Upstream 100 bases:

>100_bases
GTCAACCTCTAGTTTTTCGACACCGATGGACTTCCCAAAGGCGAGAGTGTCGTTCTACAGTGACGCCGGACACGGTGGCG
ACGGAGCCGACGCGACGGAG

Downstream 100 bases:

>100_bases
CGGCCGGCCCCGCGGCGGCGTCCGCACCGGCCGGCCCGGCGGGGGCGTCCGGCTCGGCCGGCCCGGCGGCGGCGCCCGAG
CCGACGCGGCCGGTACCGGC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MGWPMEDSASEGAFKGVRVVELAQWVFVPVAGALLADWGADVIRVERPEGDPYRALATQGIGTDGGGVNLSVALANRGKR
SVALDLRGEQGKAILHKMLETADVFLTNFRPGALRRLGLDADELTRRYPRLVYARGHGFGARGPDADHPGYDSSAFWARG
GMGYTLTPEEREYPISQRGAMGDRNGAMALAFGIAAALLGRTRTGRGTVVDVSLLATAMWTLSSDLLVALTGQAPRISSG
PGDGPNPLVGAYRTKDGRHIQLVFLESDRYWAPFCELIGRGDLVADPRFADLRARGENRVACRAELEAAFATRTFEEWKD
LLAGIDAPWAPVQSVLELVDDPQVVANGYVGEVQLDGGGSYRLPTVPVQFDSQPPVPRRAPEHGEHTESVLLELGYTWEE
IAALTEAGAIP

Sequences:

>Translated_411_residues
MGWPMEDSASEGAFKGVRVVELAQWVFVPVAGALLADWGADVIRVERPEGDPYRALATQGIGTDGGGVNLSVALANRGKR
SVALDLRGEQGKAILHKMLETADVFLTNFRPGALRRLGLDADELTRRYPRLVYARGHGFGARGPDADHPGYDSSAFWARG
GMGYTLTPEEREYPISQRGAMGDRNGAMALAFGIAAALLGRTRTGRGTVVDVSLLATAMWTLSSDLLVALTGQAPRISSG
PGDGPNPLVGAYRTKDGRHIQLVFLESDRYWAPFCELIGRGDLVADPRFADLRARGENRVACRAELEAAFATRTFEEWKD
LLAGIDAPWAPVQSVLELVDDPQVVANGYVGEVQLDGGGSYRLPTVPVQFDSQPPVPRRAPEHGEHTESVLLELGYTWEE
IAALTEAGAIP
>Mature_410_residues
GWPMEDSASEGAFKGVRVVELAQWVFVPVAGALLADWGADVIRVERPEGDPYRALATQGIGTDGGGVNLSVALANRGKRS
VALDLRGEQGKAILHKMLETADVFLTNFRPGALRRLGLDADELTRRYPRLVYARGHGFGARGPDADHPGYDSSAFWARGG
MGYTLTPEEREYPISQRGAMGDRNGAMALAFGIAAALLGRTRTGRGTVVDVSLLATAMWTLSSDLLVALTGQAPRISSGP
GDGPNPLVGAYRTKDGRHIQLVFLESDRYWAPFCELIGRGDLVADPRFADLRARGENRVACRAELEAAFATRTFEEWKDL
LAGIDAPWAPVQSVLELVDDPQVVANGYVGEVQLDGGGSYRLPTVPVQFDSQPPVPRRAPEHGEHTESVLLELGYTWEEI
AALTEAGAIP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=417, Percent_Identity=28.537170263789, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI300863124, Length=443, Percent_Identity=26.86230248307, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=408, Percent_Identity=29.656862745098, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=29.656862745098, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI300863126, Length=417, Percent_Identity=25.4196642685851, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=32.4528301886792, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458397, Length=265, Percent_Identity=32.4528301886792, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI13376042, Length=443, Percent_Identity=24.3792325056433, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI266458395, Length=149, Percent_Identity=36.241610738255, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI42822893, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=8e-17,
Organism=Escherichia coli, GI87082093, Length=396, Percent_Identity=30.3030303030303, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=28.8416075650118, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786222, Length=409, Percent_Identity=25.1833740831296, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=338, Percent_Identity=26.9230769230769, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=331, Percent_Identity=25.9818731117825, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24648431, Length=402, Percent_Identity=31.8407960199005, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24585488, Length=327, Percent_Identity=30.2752293577982, Blast_Score=119, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44274; Mature: 44143

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00583 PFKB_KINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWPMEDSASEGAFKGVRVVELAQWVFVPVAGALLADWGADVIRVERPEGDPYRALATQG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
IGTDGGGVNLSVALANRGKRSVALDLRGEQGKAILHKMLETADVFLTNFRPGALRRLGLD
CCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCHHHHHCCCC
ADELTRRYPRLVYARGHGFGARGPDADHPGYDSSAFWARGGMGYTLTPEEREYPISQRGA
HHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCHHCCCCCHHCCC
MGDRNGAMALAFGIAAALLGRTRTGRGTVVDVSLLATAMWTLSSDLLVALTGQAPRISSG
CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCC
PGDGPNPLVGAYRTKDGRHIQLVFLESDRYWAPFCELIGRGDLVADPRFADLRARGENRV
CCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCE
ACRAELEAAFATRTFEEWKDLLAGIDAPWAPVQSVLELVDDPQVVANGYVGEVQLDGGGS
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCEEEEEECCCCC
YRLPTVPVQFDSQPPVPRRAPEHGEHTESVLLELGYTWEEIAALTEAGAIP
CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
GWPMEDSASEGAFKGVRVVELAQWVFVPVAGALLADWGADVIRVERPEGDPYRALATQG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
IGTDGGGVNLSVALANRGKRSVALDLRGEQGKAILHKMLETADVFLTNFRPGALRRLGLD
CCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCHHHHHCCCC
ADELTRRYPRLVYARGHGFGARGPDADHPGYDSSAFWARGGMGYTLTPEEREYPISQRGA
HHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCHHCCCCCHHCCC
MGDRNGAMALAFGIAAALLGRTRTGRGTVVDVSLLATAMWTLSSDLLVALTGQAPRISSG
CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCC
PGDGPNPLVGAYRTKDGRHIQLVFLESDRYWAPFCELIGRGDLVADPRFADLRARGENRV
CCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCE
ACRAELEAAFATRTFEEWKDLLAGIDAPWAPVQSVLELVDDPQVVANGYVGEVQLDGGGS
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCEEEEEECCCCC
YRLPTVPVQFDSQPPVPRRAPEHGEHTESVLLELGYTWEEIAALTEAGAIP
CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]