| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312473
Identifier: 158312473
GI number: 158312473
Start: 716898
End: 717428
Strand: Direct
Name: 158312473
Synonym: Franean1_0616
Alternate gene names: NA
Gene position: 716898-717428 (Clockwise)
Preceding gene: 158312472
Following gene: 158312474
Centisome position: 7.98
GC content: 77.59
Gene sequence:
>531_bases GTGACGGCCGGCCCCGCGGCGGCGTCCGCACCGGCCGGCCCGGCGGGGGCGTCCGGCTCGGCCGGCCCGGCGGCGGCGCC CGAGCCGACGCGGCCGGTACCGGCGCCGGACGAGCGTTCGGCGCCGTACTGGGCGGCCGCGGCGCGGCACGTCCTCACCG TCGCCCGCTGCGCCCGCTGCTCCACCTACGTCGTGCCGCCGGACCACACCTGCCCGCACTGCGGCAGCACCGATCCCGGG TTCGCCTTCGAGCCGGTGAGCGGCAGGGGCACCGTGCGCTCCTGGACCGTGGTCCGCCAGTCGTTCCTGCCCGGCTTCCG CGGCGAAGTGCCCTTCCTCCTCGTCGACGTCGAGCTCGCGGAACAGCCTGAGCTGCGCATCATCGGCCGGCTCCTGGACG GCCCCGACACCACCCTGCGCATCGGCGCACCGGTGGCGGTGGCCTTCGAGGACGTCGCCGACGGCGTCTCCGTCCCCGCG TTCGCCCTGGCCGAGTCGAGTGCCACTGGCCCCGGCGAGGTGCGGTCGTGA
Upstream 100 bases:
>100_bases GGCGGGCTCCCGAGCACGGCGAGCACACCGAGTCCGTGCTGCTCGAGCTCGGCTACACCTGGGAAGAGATAGCCGCCCTC ACCGAGGCCGGAGCGATCCC
Downstream 100 bases:
>100_bases GCGCGCGGCCGGGCTCCAAGGGCCAGGTGGCAATCGTCGGCTACGCGCACAGCGACGTCACCCGGCACGCGGGACGTCCG CTCGGCGCGCTCGCCGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MTAGPAAASAPAGPAGASGSAGPAAAPEPTRPVPAPDERSAPYWAAAARHVLTVARCARCSTYVVPPDHTCPHCGSTDPG FAFEPVSGRGTVRSWTVVRQSFLPGFRGEVPFLLVDVELAEQPELRIIGRLLDGPDTTLRIGAPVAVAFEDVADGVSVPA FALAESSATGPGEVRS
Sequences:
>Translated_176_residues MTAGPAAASAPAGPAGASGSAGPAAAPEPTRPVPAPDERSAPYWAAAARHVLTVARCARCSTYVVPPDHTCPHCGSTDPG FAFEPVSGRGTVRSWTVVRQSFLPGFRGEVPFLLVDVELAEQPELRIIGRLLDGPDTTLRIGAPVAVAFEDVADGVSVPA FALAESSATGPGEVRS >Mature_175_residues TAGPAAASAPAGPAGASGSAGPAAAPEPTRPVPAPDERSAPYWAAAARHVLTVARCARCSTYVVPPDHTCPHCGSTDPGF AFEPVSGRGTVRSWTVVRQSFLPGFRGEVPFLLVDVELAEQPELRIIGRLLDGPDTTLRIGAPVAVAFEDVADGVSVPAF ALAESSATGPGEVRS
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17939; Mature: 17808
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGPAAASAPAGPAGASGSAGPAAAPEPTRPVPAPDERSAPYWAAAARHVLTVARCARC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC STYVVPPDHTCPHCGSTDPGFAFEPVSGRGTVRSWTVVRQSFLPGFRGEVPFLLVDVELA CEEEECCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECC EQPELRIIGRLLDGPDTTLRIGAPVAVAFEDVADGVSVPAFALAESSATGPGEVRS CCCCCEEHHHHHCCCCCEEEECCCEEEEHHHHHCCCCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure TAGPAAASAPAGPAGASGSAGPAAAPEPTRPVPAPDERSAPYWAAAARHVLTVARCARC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC STYVVPPDHTCPHCGSTDPGFAFEPVSGRGTVRSWTVVRQSFLPGFRGEVPFLLVDVELA CEEEECCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECC EQPELRIIGRLLDGPDTTLRIGAPVAVAFEDVADGVSVPAFALAESSATGPGEVRS CCCCCEEHHHHHCCCCCEEEECCCEEEEHHHHHCCCCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA