| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312401
Identifier: 158312401
GI number: 158312401
Start: 630384
End: 631904
Strand: Direct
Name: 158312401
Synonym: Franean1_0544
Alternate gene names: NA
Gene position: 630384-631904 (Clockwise)
Preceding gene: 158312400
Following gene: 158312404
Centisome position: 7.02
GC content: 72.85
Gene sequence:
>1521_bases TTGATCGGCAGCACCCGGACCACAGCTGCCGGGTCGGCCCAGAACGACCTGGTCACGCGGCATCCGCTGGGGCTCTCCCC GAACAGCGACCGGGTCATCGCGAAGCTCTTCCTGCCCGGTGAGGAGGGCAGCCAGCCGCACTCCCGGGCCGCCGGCATCG TGGCCCGGGCTCTCGCCCTGCCCGAGCGGGAGGTCGACAGCCTGGTCGCCGACCTCCTCGAACGGTTCGAGCCGCGCCAC CGGGACTACCGGGGCATCCTCGCGCGGCATGCCGCGGTGGTGACTCCGCGGGTGCCGGTGCCCGCGGAGCTCTCCCCAGC GCGCTGTCTGCTGCTCGGCGCGTGTTTCACCGCCGAGTACGCGGTGGAGGGCGCGGCCGTCACCAACCCCTCGGCGGTGC CGCACCCCGACCAGACCGGGCTGCCGTCCGGCGCGCTGCGACTGGCGTTGAGCCTGCGCGCTGTCGGGGAGGGCCATCTG TCCTCGATCGGCTTCGCCGTCGCGGTGATCGGTCCGGGCCCGGCGGTGCGCCTGGAGTCGCGGACCGGCCCACTCACCAC CGGCGTCGCCGTACCCGTCGAGTGGGAGGCCGCCCGGCTGCGCGCCGTGCTCACCGAACACGGGCTCGACGACGAGGTCA CCCGTGCCGTCCTCCAGAGCCTGGACCCACGGCGGCCCGGCAGTGAACCCGACCCCGATCTCTCCCGTGCCTTCGCCGCG GTTCCCCCCGACCTGCTCCGTCGCCCCCAGGCACCCGGGATCCTCGCCGGGATCCGCTCGATCGCCGGATCATTGCGGCG GGTCGAGTTCCCACCCGACAGCGCCCTGCCGCAACGGGTGCTGTGGCCCACCGTCACCAGCGAGAGCAACGGCATGGAGG ACGCGCGGTTCGTCCGGTTCACCGCGCCGGACGGGACCGCGGACTACCGGGCCACCTACACCGCCTTCGACGGCACGGAC ATCTCCCCGCGCCTGCTCACCAGCCCCGACCTGCGGGTCTTCACCACCGCACCGCTCACCGGCCCGGCCGCCCGTAACAA GGGCATGGCGCTGTTCCCCCGGCTGGTCGACGGTCGCCATCTCGCGCTCTGTCGCTCCGACGGCGAGTCCACCGGTCTGA CCGCATCGGATGACGGCCAGGTATGGGGGCCGGCGCGTCCGCTCCACGGGCCGCGGGTCGCCTTCGAACTGCTCCAGGTG GGCAACTGCGGGTCCCCGGTCGAGACGTCCGCGGGCTGGCTCACGCTCACCCACGGCGTCGGGCCGATGCGGACGTACAC CATCGGCGCGATCCTGCTTGATCTCGACGATCCGGGAAGGGTGGTCGCGGCGCTGCCCGAACCACTGCTCGCTCCGACCG GGCAGGAGAGCACGGGCTATGTCCCCAACGTCGTCTACTCCTGCGGCAGCCTGATCCACCACGGTCTGCTGTGGCTGCCG TACGGGATCGGCGACACCCGGATCGGGATGGCCAGCGTGCCCGTCGACCGGCTCCTCGCACGAATGGTTCCCGTCGGGTG A
Upstream 100 bases:
>100_bases GGCTCGAGCCCGGCGGCCGCAACCTCAACCAGGGCGCCGAATCGACGCTCGCCCTGCTCTCCACGACCCAGCACGCCCGC CGCCTCCTGGCATCGACGCC
Downstream 100 bases:
>100_bases CCAGCCCGCGGGGGCGGCGGGATCAGAGGACAGGGTCGGCGAGAACGCCCGCGTAGACGGCGAGATAGTCGGCGACCATG CGCGCGGTGGAGAACCTCCG
Product: PH1107-like glycosidase
Products: NA
Alternate protein names: Glycosidase Related Protein; Glycosylase; Glycosidase-Like Protein; Glycosidase-Related; Conserved Domain Protein; Glycosidase-Related Protein; Cytoplasmic Protein; Glycosylase-Like Protein
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MIGSTRTTAAGSAQNDLVTRHPLGLSPNSDRVIAKLFLPGEEGSQPHSRAAGIVARALALPEREVDSLVADLLERFEPRH RDYRGILARHAAVVTPRVPVPAELSPARCLLLGACFTAEYAVEGAAVTNPSAVPHPDQTGLPSGALRLALSLRAVGEGHL SSIGFAVAVIGPGPAVRLESRTGPLTTGVAVPVEWEAARLRAVLTEHGLDDEVTRAVLQSLDPRRPGSEPDPDLSRAFAA VPPDLLRRPQAPGILAGIRSIAGSLRRVEFPPDSALPQRVLWPTVTSESNGMEDARFVRFTAPDGTADYRATYTAFDGTD ISPRLLTSPDLRVFTTAPLTGPAARNKGMALFPRLVDGRHLALCRSDGESTGLTASDDGQVWGPARPLHGPRVAFELLQV GNCGSPVETSAGWLTLTHGVGPMRTYTIGAILLDLDDPGRVVAALPEPLLAPTGQESTGYVPNVVYSCGSLIHHGLLWLP YGIGDTRIGMASVPVDRLLARMVPVG
Sequences:
>Translated_506_residues MIGSTRTTAAGSAQNDLVTRHPLGLSPNSDRVIAKLFLPGEEGSQPHSRAAGIVARALALPEREVDSLVADLLERFEPRH RDYRGILARHAAVVTPRVPVPAELSPARCLLLGACFTAEYAVEGAAVTNPSAVPHPDQTGLPSGALRLALSLRAVGEGHL SSIGFAVAVIGPGPAVRLESRTGPLTTGVAVPVEWEAARLRAVLTEHGLDDEVTRAVLQSLDPRRPGSEPDPDLSRAFAA VPPDLLRRPQAPGILAGIRSIAGSLRRVEFPPDSALPQRVLWPTVTSESNGMEDARFVRFTAPDGTADYRATYTAFDGTD ISPRLLTSPDLRVFTTAPLTGPAARNKGMALFPRLVDGRHLALCRSDGESTGLTASDDGQVWGPARPLHGPRVAFELLQV GNCGSPVETSAGWLTLTHGVGPMRTYTIGAILLDLDDPGRVVAALPEPLLAPTGQESTGYVPNVVYSCGSLIHHGLLWLP YGIGDTRIGMASVPVDRLLARMVPVG >Mature_506_residues MIGSTRTTAAGSAQNDLVTRHPLGLSPNSDRVIAKLFLPGEEGSQPHSRAAGIVARALALPEREVDSLVADLLERFEPRH RDYRGILARHAAVVTPRVPVPAELSPARCLLLGACFTAEYAVEGAAVTNPSAVPHPDQTGLPSGALRLALSLRAVGEGHL SSIGFAVAVIGPGPAVRLESRTGPLTTGVAVPVEWEAARLRAVLTEHGLDDEVTRAVLQSLDPRRPGSEPDPDLSRAFAA VPPDLLRRPQAPGILAGIRSIAGSLRRVEFPPDSALPQRVLWPTVTSESNGMEDARFVRFTAPDGTADYRATYTAFDGTD ISPRLLTSPDLRVFTTAPLTGPAARNKGMALFPRLVDGRHLALCRSDGESTGLTASDDGQVWGPARPLHGPRVAFELLQV GNCGSPVETSAGWLTLTHGVGPMRTYTIGAILLDLDDPGRVVAALPEPLLAPTGQESTGYVPNVVYSCGSLIHHGLLWLP YGIGDTRIGMASVPVDRLLARMVPVG
Specific function: Unknown
COG id: COG2152
COG function: function code G; Predicted glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53450; Mature: 53450
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGSTRTTAAGSAQNDLVTRHPLGLSPNSDRVIAKLFLPGEEGSQPHSRAAGIVARALAL CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC PEREVDSLVADLLERFEPRHRDYRGILARHAAVVTPRVPVPAELSPARCLLLGACFTAEY CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCHHHEEEHHHHHHHHH AVEGAAVTNPSAVPHPDQTGLPSGALRLALSLRAVGEGHLSSIGFAVAVIGPGPAVRLES HCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEC RTGPLTTGVAVPVEWEAARLRAVLTEHGLDDEVTRAVLQSLDPRRPGSEPDPDLSRAFAA CCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC VPPDLLRRPQAPGILAGIRSIAGSLRRVEFPPDSALPQRVLWPTVTSESNGMEDARFVRF CCHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCEECCEECCCCCCCCCCEEEEE TAPDGTADYRATYTAFDGTDISPRLLTSPDLRVFTTAPLTGPAARNKGMALFPRLVDGRH ECCCCCCCCEEEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCEEEHHHCCCCE LALCRSDGESTGLTASDDGQVWGPARPLHGPRVAFELLQVGNCGSPVETSAGWLTLTHGV EEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC GPMRTYTIGAILLDLDDPGRVVAALPEPLLAPTGQESTGYVPNVVYSCGSLIHHGLLWLP CCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE YGIGDTRIGMASVPVDRLLARMVPVG CCCCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure MIGSTRTTAAGSAQNDLVTRHPLGLSPNSDRVIAKLFLPGEEGSQPHSRAAGIVARALAL CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC PEREVDSLVADLLERFEPRHRDYRGILARHAAVVTPRVPVPAELSPARCLLLGACFTAEY CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCCHHHEEEHHHHHHHHH AVEGAAVTNPSAVPHPDQTGLPSGALRLALSLRAVGEGHLSSIGFAVAVIGPGPAVRLES HCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEC RTGPLTTGVAVPVEWEAARLRAVLTEHGLDDEVTRAVLQSLDPRRPGSEPDPDLSRAFAA CCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC VPPDLLRRPQAPGILAGIRSIAGSLRRVEFPPDSALPQRVLWPTVTSESNGMEDARFVRF CCHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCEECCEECCCCCCCCCCEEEEE TAPDGTADYRATYTAFDGTDISPRLLTSPDLRVFTTAPLTGPAARNKGMALFPRLVDGRH ECCCCCCCCEEEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCEEEHHHCCCCE LALCRSDGESTGLTASDDGQVWGPARPLHGPRVAFELLQVGNCGSPVETSAGWLTLTHGV EEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC GPMRTYTIGAILLDLDDPGRVVAALPEPLLAPTGQESTGYVPNVVYSCGSLIHHGLLWLP CCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE YGIGDTRIGMASVPVDRLLARMVPVG CCCCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA