BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is ykvO [H]

Identifier: 158312340

GI number: 158312340

Start: 565947

End: 566702

Strand: Direct

Name: ykvO [H]

Synonym: Franean1_0480

Alternate gene names: 158312340

Gene position: 565947-566702 (Clockwise)

Preceding gene: 158312336

Following gene: 158312341

Centisome position: 6.3

GC content: 69.18

Gene sequence:

>756_bases
GTGTCATCGCTCACTGGAAAACCCGCCGCGCTGGTGACCGGCGGTACCACCGGAATAGGTCTCGCGACGGCGCAGATGCT
GCACGCTGACGGGTTCGACGTGCTCATCACCGGCCAAAATCCAGAAACACTTGCCGCCGCTGCCGAACAGTTGCCCGCCG
ACGTGGTCGTGCTACGTTCCGACGCCCGCACACTGTCCGAGCCGGATCGGGTGGCGGCTGCCGTTCGGGATCGTTTCGGC
CGGCTCGACGTAGTATTCCTCAACGCAGGTATCGGCCGGCTCGTCCCGATCGAAGCAGTCGACGAGGCGACGTACGACGA
AATGTTCGACGTGAACGTCAGGAGTCAGCTGTTCACGCTGCAACGGGTCCTGCCCCTGCTGCGAGACGGCGGCTCCGTCG
TGTTCAGTACGGCCCTGGGCGCCACGCTCGGTCTGGCCGACTGGTCGGTGTACAGCGCGACGAAGGGCGCGCTGACTGCC
CTGGTCCACGCCTTGGCCGTGGAACTCGCGCCGCGAGGAATCCGGGTCAACGCAGTCAGTGCCGGCCCGGCGGACACGCC
CGCGCTCTCCAAGCTCGGCCTGCCCGACGCGGCGCTGGCCACAATGCGCAAGGACCTGGCCGCCGCGATCCCCCTGGGCC
GCCTGGGCGTCGCCCAGGACGTCGCCCGCGCCGTGGCGTTCCTCGGCTCCCCCGCAGCCGGTTTCGTCACCGGCACGACG
ATCGCGGTCGACGGCGGCCTCGGCGTGGCGGTCTGA

Upstream 100 bases:

>100_bases
TCCAGTTGTGGCTAGCGTAAGCCGCACAGAGCGTTCGCCACGCCAGTCGTCCCACCTTCTGAGGGTCACTTGGCGCCTGC
ACTCGAACGGAGCATTTTTC

Downstream 100 bases:

>100_bases
GTCGGACGTCCAGGCCCCACGACAGCGTCACGACAAGGACAAGGACACACCCATGACCACGACAAACGCCATCGCCCAGG
CCCAGCCGCGGGTCGCGCTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSSLTGKPAALVTGGTTGIGLATAQMLHADGFDVLITGQNPETLAAAAEQLPADVVVLRSDARTLSEPDRVAAAVRDRFG
RLDVVFLNAGIGRLVPIEAVDEATYDEMFDVNVRSQLFTLQRVLPLLRDGGSVVFSTALGATLGLADWSVYSATKGALTA
LVHALAVELAPRGIRVNAVSAGPADTPALSKLGLPDAALATMRKDLAAAIPLGRLGVAQDVARAVAFLGSPAAGFVTGTT
IAVDGGLGVAV

Sequences:

>Translated_251_residues
MSSLTGKPAALVTGGTTGIGLATAQMLHADGFDVLITGQNPETLAAAAEQLPADVVVLRSDARTLSEPDRVAAAVRDRFG
RLDVVFLNAGIGRLVPIEAVDEATYDEMFDVNVRSQLFTLQRVLPLLRDGGSVVFSTALGATLGLADWSVYSATKGALTA
LVHALAVELAPRGIRVNAVSAGPADTPALSKLGLPDAALATMRKDLAAAIPLGRLGVAQDVARAVAFLGSPAAGFVTGTT
IAVDGGLGVAV
>Mature_250_residues
SSLTGKPAALVTGGTTGIGLATAQMLHADGFDVLITGQNPETLAAAAEQLPADVVVLRSDARTLSEPDRVAAAVRDRFGR
LDVVFLNAGIGRLVPIEAVDEATYDEMFDVNVRSQLFTLQRVLPLLRDGGSVVFSTALGATLGLADWSVYSATKGALTAL
VHALAVELAPRGIRVNAVSAGPADTPALSKLGLPDAALATMRKDLAAAIPLGRLGVAQDVARAVAFLGSPAAGFVTGTTI
AVDGGLGVAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=31.9502074688797, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=31.6872427983539, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=33.8709677419355, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=29.6442687747036, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=34.8017621145374, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.8181818181818, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=31.25, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=30.4347826086957, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=30.1136363636364, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI223718074, Length=203, Percent_Identity=36.4532019704434, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=31.4176245210728, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI4503301, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4503817, Length=204, Percent_Identity=22.5490196078431, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=31.9230769230769, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=32.6446280991736, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=31.1538461538462, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=30.5220883534137, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=32.1428571428571, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=30.7086614173228, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=31.8897637795276, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=29.4354838709677, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=30.2788844621514, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=29.5275590551181, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787545, Length=263, Percent_Identity=27.7566539923954, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789378, Length=243, Percent_Identity=27.1604938271605, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789057, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787526, Length=181, Percent_Identity=29.2817679558011, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=29.1666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.1285140562249, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=30.8, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=33.4586466165414, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.8270676691729, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=29.0566037735849, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=30.327868852459, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=253, Percent_Identity=27.2727272727273, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=28.0769230769231, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=28.7878787878788, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=30.9236947791165, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=28.0769230769231, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=28.8973384030418, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=26.1538461538462, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=254, Percent_Identity=27.5590551181102, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=256, Percent_Identity=31.640625, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=27.7566539923954, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=26.615969581749, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=26.5384615384615, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=28.0769230769231, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=28.6792452830189, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=27.4131274131274, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=27.5471698113208, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=164, Percent_Identity=32.3170731707317, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=26.6932270916335, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=29.7297297297297, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=29.2682926829268, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322067, Length=214, Percent_Identity=28.5046728971963, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=189, Percent_Identity=25.3968253968254, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=33.596837944664, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=33.201581027668, Blast_Score=118, Evalue=4e-27,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.8645418326693, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=32.2709163346614, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI21357041, Length=241, Percent_Identity=32.3651452282158, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=28.8, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644339, Length=244, Percent_Identity=29.5081967213115, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24644337, Length=182, Percent_Identity=31.8681318681319, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=29.811320754717, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25493; Mature: 25361

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLTGKPAALVTGGTTGIGLATAQMLHADGFDVLITGQNPETLAAAAEQLPADVVVLRS
CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEC
DARTLSEPDRVAAAVRDRFGRLDVVFLNAGIGRLVPIEAVDEATYDEMFDVNVRSQLFTL
CCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHCCCHHHHHCCCCHHHHHHHH
QRVLPLLRDGGSVVFSTALGATLGLADWSVYSATKGALTALVHALAVELAPRGIRVNAVS
HHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEC
AGPADTPALSKLGLPDAALATMRKDLAAAIPLGRLGVAQDVARAVAFLGSPAAGFVTGTT
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCE
IAVDGGLGVAV
EEEECCCCCCC
>Mature Secondary Structure 
SSLTGKPAALVTGGTTGIGLATAQMLHADGFDVLITGQNPETLAAAAEQLPADVVVLRS
CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEC
DARTLSEPDRVAAAVRDRFGRLDVVFLNAGIGRLVPIEAVDEATYDEMFDVNVRSQLFTL
CCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHCCCHHHHHCCCCHHHHHHHH
QRVLPLLRDGGSVVFSTALGATLGLADWSVYSATKGALTALVHALAVELAPRGIRVNAVS
HHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEC
AGPADTPALSKLGLPDAALATMRKDLAAAIPLGRLGVAQDVARAVAFLGSPAAGFVTGTT
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCE
IAVDGGLGVAV
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]