BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is ykvO [H]

Identifier: 158312341

GI number: 158312341

Start: 566755

End: 567525

Strand: Direct

Name: ykvO [H]

Synonym: Franean1_0481

Alternate gene names: 158312341

Gene position: 566755-567525 (Clockwise)

Preceding gene: 158312340

Following gene: 158312342

Centisome position: 6.31

GC content: 67.57

Gene sequence:

>771_bases
ATGACCACGACAAACGCCATCGCCCAGGCCCAGCCGCGGGTCGCGCTCGTCACCGGCGGAACCACCGGAATCGGCCTGGC
CACGGCTCGGCTGCTGCATGCCGACGGGTTCGCCGTCGCGATCACCGGCCAGAACCCCGAGACACTCGCGGCGGCGCGGC
ACGTGTTGCCCGATGACGTCCTCGTCCAGCGCGCCGACGCCCGGGTCCTGGCGGACGCCGACGCGCTCGCCGCCGAACTC
CGTGACCGGTTCGGGCACCTCGACGCGGTGTTCCTGAACGCCGCCGTCGCCCAGCCCTCGTCGTTCAGCTCCGTCACCGA
GGAATCGTACAAAGAACACTTCGGAGTGAACGTGAAAGGGCAGTTCTTCACGTTGCAGCGAGTGCTGCCGCTGCTCCGCG
ACGGCGGTACCGTAGTGTTCAACAGCTCGCGACTGGTGGCCCGGTCGTTTCCTGGGATGTCGCTGTACGTTGCCACCAAG
GGAGCGGTGGCATCGATGGCTAGGGCGCTCGCCGTGGAACTCGCCCCTCGGCGGATTCGGGTCAACGTCGTCAGCCCTGG
CCCGGTCGACACCCCGGCACTGGCGAAACAAGGGCTGTCCGCCGCAGAACTGACCAGTCTCCGCACGACGCTGACGGCCA
AGGTTCCGCTCGGCCGAATAGCGTCGGACGAAGAAGTGGCCCATACCGTCGCTTTCCTGGTTTCGGACGCGGCCAGCTAT
CTCACCGGCGCCGACATCGTCGTCGACGGCGGGATGATGGCCAGCGTCTAA

Upstream 100 bases:

>100_bases
ACCGGCACGACGATCGCGGTCGACGGCGGCCTCGGCGTGGCGGTCTGAGTCGGACGTCCAGGCCCCACGACAGCGTCACG
ACAAGGACAAGGACACACCC

Downstream 100 bases:

>100_bases
AACCCGTGACAGCATCGTTCCCGTCGACCCCACCCGCCTGACCGAAGGAACTCAGACCAGTCATGGACAAGGCCGAACTC
GACGAACAGAACCGTCGGGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTTTNAIAQAQPRVALVTGGTTGIGLATARLLHADGFAVAITGQNPETLAAARHVLPDDVLVQRADARVLADADALAAEL
RDRFGHLDAVFLNAAVAQPSSFSSVTEESYKEHFGVNVKGQFFTLQRVLPLLRDGGTVVFNSSRLVARSFPGMSLYVATK
GAVASMARALAVELAPRRIRVNVVSPGPVDTPALAKQGLSAAELTSLRTTLTAKVPLGRIASDEEVAHTVAFLVSDAASY
LTGADIVVDGGMMASV

Sequences:

>Translated_256_residues
MTTTNAIAQAQPRVALVTGGTTGIGLATARLLHADGFAVAITGQNPETLAAARHVLPDDVLVQRADARVLADADALAAEL
RDRFGHLDAVFLNAAVAQPSSFSSVTEESYKEHFGVNVKGQFFTLQRVLPLLRDGGTVVFNSSRLVARSFPGMSLYVATK
GAVASMARALAVELAPRRIRVNVVSPGPVDTPALAKQGLSAAELTSLRTTLTAKVPLGRIASDEEVAHTVAFLVSDAASY
LTGADIVVDGGMMASV
>Mature_255_residues
TTTNAIAQAQPRVALVTGGTTGIGLATARLLHADGFAVAITGQNPETLAAARHVLPDDVLVQRADARVLADADALAAELR
DRFGHLDAVFLNAAVAQPSSFSSVTEESYKEHFGVNVKGQFFTLQRVLPLLRDGGTVVFNSSRLVARSFPGMSLYVATKG
AVASMARALAVELAPRRIRVNVVSPGPVDTPALAKQGLSAAELTSLRTTLTAKVPLGRIASDEEVAHTVAFLVSDAASYL
TGADIVVDGGMMASV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=34.6613545816733, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.404958677686, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=34.1269841269841, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.241935483871, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=32.258064516129, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=32.5301204819277, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI59889578, Length=187, Percent_Identity=34.7593582887701, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=28.3464566929134, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI66933014, Length=180, Percent_Identity=28.8888888888889, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.6315789473684, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI126723191, Length=200, Percent_Identity=34.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=27.5590551181102, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503301, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503817, Length=251, Percent_Identity=23.1075697211155, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=29.2490118577075, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=32.4110671936759, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=29.4354838709677, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786812, Length=247, Percent_Identity=34.0080971659919, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=28.7449392712551, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=31.496062992126, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=31.6205533596838, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=30.4878048780488, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=29.4820717131474, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=26.6932270916335, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=31.9371727748691, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=28.1767955801105, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787545, Length=252, Percent_Identity=26.5873015873016, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.1428571428571, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=256, Percent_Identity=32.8125, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=33.2, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=29.2682926829268, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=255, Percent_Identity=30.5882352941176, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=256, Percent_Identity=31.25, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=31.3253012048193, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=255, Percent_Identity=27.843137254902, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=27.4509803921569, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.0697674418605, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=31.2741312741313, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=257, Percent_Identity=31.1284046692607, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=256, Percent_Identity=28.125, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=30.5019305019305, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=28.3464566929134, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=30.188679245283, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=255, Percent_Identity=30.1960784313725, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=250, Percent_Identity=28.4, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=29.5546558704453, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=27.5590551181102, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=163, Percent_Identity=32.5153374233129, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=27.2030651340996, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=27.9352226720648, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=260, Percent_Identity=26.1538461538462, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.4584980237154, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=93, Percent_Identity=39.7849462365591, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=29.8804780876494, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=234, Percent_Identity=29.0598290598291, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=35.8024691358025, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=34.5381526104418, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=31.9838056680162, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=32.2834645669291, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=31.7269076305221, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.5555555555556, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24644337, Length=183, Percent_Identity=32.7868852459016, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26633; Mature: 26502

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTNAIAQAQPRVALVTGGTTGIGLATARLLHADGFAVAITGQNPETLAAARHVLPDDV
CCCCCCHHHCCCCEEEEECCCCCHHHHHHHHEECCCEEEEEECCCCHHHHHHHHCCCHHH
LVQRADARVLADADALAAELRDRFGHLDAVFLNAAVAQPSSFSSVTEESYKEHFGVNVKG
HHHHCCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
QFFTLQRVLPLLRDGGTVVFNSSRLVARSFPGMSLYVATKGAVASMARALAVELAPRRIR
CEEEHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE
VNVVSPGPVDTPALAKQGLSAAELTSLRTTLTAKVPLGRIASDEEVAHTVAFLVSDAASY
EEEECCCCCCCHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LTGADIVVDGGMMASV
HCCCCEEEECCEECCC
>Mature Secondary Structure 
TTTNAIAQAQPRVALVTGGTTGIGLATARLLHADGFAVAITGQNPETLAAARHVLPDDV
CCCCCHHHCCCCEEEEECCCCCHHHHHHHHEECCCEEEEEECCCCHHHHHHHHCCCHHH
LVQRADARVLADADALAAELRDRFGHLDAVFLNAAVAQPSSFSSVTEESYKEHFGVNVKG
HHHHCCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
QFFTLQRVLPLLRDGGTVVFNSSRLVARSFPGMSLYVATKGAVASMARALAVELAPRRIR
CEEEHHHHHHHHHCCCEEEEECCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE
VNVVSPGPVDTPALAKQGLSAAELTSLRTTLTAKVPLGRIASDEEVAHTVAFLVSDAASY
EEEECCCCCCCHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LTGADIVVDGGMMASV
HCCCCEEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]