Click here to switch to the map view.

The map label for this gene is ygjR [C]

Identifier: 158312316

GI number: 158312316

Start: 536845

End: 537933

Strand: Direct

Name: ygjR [C]

Synonym: Franean1_0454

Alternate gene names: 158312316

Gene position: 536845-537933 (Clockwise)

Preceding gene: 158312315

Following gene: 158312317

Centisome position: 5.98

GC content: 69.33

Gene sequence:

>1089_bases
ATGTCGTTCCGCTGGGCGATCGCGGGCACCGGCGCCATCGCACACCAGTTCGCCGCCGCGCTGGGCCGCTTGCCCGACGC
CGAGCTCGTGGCGGTCGGCTCCCGCCGCCAGCAGACGGCTGACGCGTTCGGCGAACGGTTCGGCATCCCGCGCCGGCGCA
GGTACAGCTCATACGAGCGGCTCGCCGCCGACGACGGTGTCGATGTCGTCTACGTGGCCTCCCCGCACTCCCACCATCAC
CGTCACACCCTGCTGTTCCTGAGCGCGGGGCGGGGTGTGCTGTGCGAGAAGCCGTTCGCGCTTGACGCCGAGCAGGCCGC
CGAGATGGTGGTTGCCGCCCAAACCCATGGGCAGTTCCTGATGGAAGCCATGTGGAGCCGCTTCCTGCCTGCCTACGTCA
AGATCCGGGAGTTGGTCGCCGCAGGCGCCATCGGCACCGTCCTGGCCGTCGAGGGTGACTTCGGATTCCCCCGCCCGGTG
GATCCCGCCAACCGGGTGTTCGATCTCGCCCAGGGCGGCGGCGCGCTGCTCGACCTGGGCGTCTATCCGGTGTCGCTGGC
CAGCATGCTGCTGGGCGAACCCGACCGGGTGGTGGCACTCGGCCAGCTCGGCGAGACCAGCGTCGACGAGCAGGTCGCCG
TCCTGATGGGCTACCACACGGGCGCGGTGGCTGTCGCGAAGGCATCCCTGCGCGCGAGTCTCGCCTGCACCGGCCGGGTC
TCCGGCACGGAGGGCAGCATCGAACTCGCCACGTTCATGCACTGCCCGGACAACCTGACCGTCCGACGGAAGTCCGGCAC
CCAACGGCTATACCTGCCCGCTGACAGTGACGTCACTGCCACCGACGCCACTGCCACCGCCGGTGATATCGACGGTGCCG
ACCGCCGGAACCATCGGGACCGGGCGGCCGGCGGCGGGCTACATCACCAAATCCGTCACGTGCACTTCCGGTTACAGGCC
GGCCACCTCGACAGCGACATCATGTCCCAGGCCGAATCCGTGTCGGTGATGCGGACACTCGATGCAGCCCGGGCCCAGAT
CGGTCTGCGCTACCTGGCCACCCTGATGGATGGTAGCCGGCAGAGTTGA

Upstream 100 bases:

>100_bases
GGCGACGACGCCAACGGCGTGTCGGAGCTGGACCTCGCTACCGGAATATCCGCGGCGGTAGTCCGCCGGCCGCGCGCGCA
CCAGGAATCGAGGATCTGTC

Downstream 100 bases:

>100_bases
GGACGCTCGATACCCGAGCCGCTCAGCCTCGGTGAACACCCTCTTCCTGGTCGCCTCCGAGATGGTCTGGCCAGGAGTGC
CATTCAGGACATAGCTCACG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSFRWAIAGTGAIAHQFAAALGRLPDAELVAVGSRRQQTADAFGERFGIPRRRRYSSYERLAADDGVDVVYVASPHSHHH
RHTLLFLSAGRGVLCEKPFALDAEQAAEMVVAAQTHGQFLMEAMWSRFLPAYVKIRELVAAGAIGTVLAVEGDFGFPRPV
DPANRVFDLAQGGGALLDLGVYPVSLASMLLGEPDRVVALGQLGETSVDEQVAVLMGYHTGAVAVAKASLRASLACTGRV
SGTEGSIELATFMHCPDNLTVRRKSGTQRLYLPADSDVTATDATATAGDIDGADRRNHRDRAAGGGLHHQIRHVHFRLQA
GHLDSDIMSQAESVSVMRTLDAARAQIGLRYLATLMDGSRQS

Sequences:

>Translated_362_residues
MSFRWAIAGTGAIAHQFAAALGRLPDAELVAVGSRRQQTADAFGERFGIPRRRRYSSYERLAADDGVDVVYVASPHSHHH
RHTLLFLSAGRGVLCEKPFALDAEQAAEMVVAAQTHGQFLMEAMWSRFLPAYVKIRELVAAGAIGTVLAVEGDFGFPRPV
DPANRVFDLAQGGGALLDLGVYPVSLASMLLGEPDRVVALGQLGETSVDEQVAVLMGYHTGAVAVAKASLRASLACTGRV
SGTEGSIELATFMHCPDNLTVRRKSGTQRLYLPADSDVTATDATATAGDIDGADRRNHRDRAAGGGLHHQIRHVHFRLQA
GHLDSDIMSQAESVSVMRTLDAARAQIGLRYLATLMDGSRQS
>Mature_361_residues
SFRWAIAGTGAIAHQFAAALGRLPDAELVAVGSRRQQTADAFGERFGIPRRRRYSSYERLAADDGVDVVYVASPHSHHHR
HTLLFLSAGRGVLCEKPFALDAEQAAEMVVAAQTHGQFLMEAMWSRFLPAYVKIRELVAAGAIGTVLAVEGDFGFPRPVD
PANRVFDLAQGGGALLDLGVYPVSLASMLLGEPDRVVALGQLGETSVDEQVAVLMGYHTGAVAVAKASLRASLACTGRVS
GTEGSIELATFMHCPDNLTVRRKSGTQRLYLPADSDVTATDATATAGDIDGADRRNHRDRAAGGGLHHQIRHVHFRLQAG
HLDSDIMSQAESVSVMRTLDAARAQIGLRYLATLMDGSRQS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=355, Percent_Identity=33.2394366197183, Blast_Score=192, Evalue=4e-49,
Organism=Escherichia coli, GI145693182, Length=292, Percent_Identity=29.7945205479452, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787574, Length=195, Percent_Identity=34.3589743589744, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24581117, Length=350, Percent_Identity=31.1428571428571, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24581115, Length=358, Percent_Identity=30.1675977653631, Blast_Score=155, Evalue=6e-38,
Organism=Drosophila melanogaster, GI24584727, Length=356, Percent_Identity=27.5280898876405, Blast_Score=128, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38764; Mature: 38633

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRWAIAGTGAIAHQFAAALGRLPDAELVAVGSRRQQTADAFGERFGIPRRRRYSSYER
CCEEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH
LAADDGVDVVYVASPHSHHHRHTLLFLSAGRGVLCEKPFALDAEQAAEMVVAAQTHGQFL
HHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHEEEEHHHHHHHH
MEAMWSRFLPAYVKIRELVAAGAIGTVLAVEGDFGFPRPVDPANRVFDLAQGGGALLDLG
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECC
VYPVSLASMLLGEPDRVVALGQLGETSVDEQVAVLMGYHTGAVAVAKASLRASLACTGRV
CHHHHHHHHHHCCCCCEEEECCCCCCCHHHHEEEEEECCCCHHHHHHHHHHEEEEEECCC
SGTEGSIELATFMHCPDNLTVRRKSGTQRLYLPADSDVTATDATATAGDIDGADRRNHRD
CCCCCCEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
RAAGGGLHHQIRHVHFRLQAGHLDSDIMSQAESVSVMRTLDAARAQIGLRYLATLMDGSR
HHCCCCHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QS
CC
>Mature Secondary Structure 
SFRWAIAGTGAIAHQFAAALGRLPDAELVAVGSRRQQTADAFGERFGIPRRRRYSSYER
CEEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH
LAADDGVDVVYVASPHSHHHRHTLLFLSAGRGVLCEKPFALDAEQAAEMVVAAQTHGQFL
HHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHEEEEHHHHHHHH
MEAMWSRFLPAYVKIRELVAAGAIGTVLAVEGDFGFPRPVDPANRVFDLAQGGGALLDLG
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECC
VYPVSLASMLLGEPDRVVALGQLGETSVDEQVAVLMGYHTGAVAVAKASLRASLACTGRV
CHHHHHHHHHHCCCCCEEEECCCCCCCHHHHEEEEEECCCCHHHHHHHHHHEEEEEECCC
SGTEGSIELATFMHCPDNLTVRRKSGTQRLYLPADSDVTATDATATAGDIDGADRRNHRD
CCCCCCEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
RAAGGGLHHQIRHVHFRLQAGHLDSDIMSQAESVSVMRTLDAARAQIGLRYLATLMDGSR
HHCCCCHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]