| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pld1 [H]
Identifier: 158312309
GI number: 158312309
Start: 526304
End: 527542
Strand: Direct
Name: pld1 [H]
Synonym: Franean1_0447
Alternate gene names: 158312309
Gene position: 526304-527542 (Clockwise)
Preceding gene: 158312308
Following gene: 158312311
Centisome position: 5.86
GC content: 65.46
Gene sequence:
>1239_bases ATGTCCGTGCGCCTGCTGTACCTGATCTTCGTTCGGGTCTGTGGCTGGCTGGTTCTACTCGGTCGCTCGTCGGCCGCCAA GGACTTGGAATTGCTGGTGCTACGGCATGAGGTCACGGTGCTGCGCCGTACCCAGCCCAGGCCCCGGTGGGACTGGGCGG ACCGGGCGGTCCTCAATCAAACAAGATCAAGGAATGGCGGGGTCTGGCCACCCGCTACGACAAGACACCCGAAAGCTACG CCGCAGGACTCCACCTGCGCGGATCCATCCTCTGGCTACGCAGCCTGCCAACCCCATGATCCGAACTTGGAACAGACCCT AGGTACCGACGGACCCGAGGTTCCCGTGGTCTGCGTCGGAACGAGCCCGCTGGGCGGGCTCCCGACAATCTACGGCTATG ACGTCGAGGCGGGGCAGGCGGTGGCGACGATTCGCCGCGTGTTGGAGTCACCGATCGACTTCATCGACACCTCGAACGAG TACGCGAACGGCGAAAGCGAGCGGCGCATCGGCGAGGCGTTGCGCAGCGCGGCAGGGGGTCCCGGCAATGTCGTGCTCGC GACCAAGGCAGATCCCGCGCTGTGGGCCACGGAGTTCCCCGGCAGCCGAGTGCGGGAATCGTTCCGGGAGAGCACCGAGC GGCTCGGGGTTGATCGGTTCGAGGTGTTCTACCTGCACGACCCGGAGCGCTTCGATTTCGGGTACATGACGGCCCCCGGA GGTGCGGTCGAGGCGATGGTGCAGCTGCGTACCGACGGCCTGGCCACGGCAATCGGCGTGGCCGGCAGTGACATCAGCGA GATGCGCCGCTACGTCGACCTCGGCGTCTTCGACGTCATCCTGAACCACAACCGGTATACACTTCTTGATCGTTCTGCGG ACGCCCTCATCGACCACGCGGTCAACGCCGGCCTGTCCTTCATTAATGCCGCACCGTATGCCAGCGGCATGCTCGCGAAG CAGGTCTCGGCCCGTCCGAGGTATCAATATCGCGCGCCATCGCCCGAGATCGTCCGCACCACCGCGTGGTTGCACCAGGA GTGCGCCCGGTTCCACGTGCCGCTCGCGGCACTCGCCCTCCAGTTCTCGACACGCGATCCTCGGATCAGCTCGACGGTCG TCGGCGTATCAGCTCCGGAGCGTGTGGATGAACTCGTGGAGAACGAGCAGCGTGAGATCCCGTCGGAGCTGTGGGACTCC GTGCGCGAGCGGCTGGTGTTGCCGCCCACAGTGACGTAA
Upstream 100 bases:
>100_bases ACCCTCCTCGCGGTAGTCGCCTGTGGGGTGCCAGAAGTCGGCCTGAGCCTGTGACCTGGGGCGATGCGCCGGCGCGGGGT CGGCCGCATGATGGTCAACT
Downstream 100 bases:
>100_bases CGGTATGGCGGTGCTATGCGGGACGTCCGGCGGCGTGACCACCCGCATGCGATGAGGCCCATCGGACCTCTACGTGCCCC GGCCCCAGTTCGCAACAGCC
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSVRLLYLIFVRVCGWLVLLGRSSAAKDLELLVLRHEVTVLRRTQPRPRWDWADRAVLNQTRSRNGGVWPPATTRHPKAT PQDSTCADPSSGYAACQPHDPNLEQTLGTDGPEVPVVCVGTSPLGGLPTIYGYDVEAGQAVATIRRVLESPIDFIDTSNE YANGESERRIGEALRSAAGGPGNVVLATKADPALWATEFPGSRVRESFRESTERLGVDRFEVFYLHDPERFDFGYMTAPG GAVEAMVQLRTDGLATAIGVAGSDISEMRRYVDLGVFDVILNHNRYTLLDRSADALIDHAVNAGLSFINAAPYASGMLAK QVSARPRYQYRAPSPEIVRTTAWLHQECARFHVPLAALALQFSTRDPRISSTVVGVSAPERVDELVENEQREIPSELWDS VRERLVLPPTVT
Sequences:
>Translated_412_residues MSVRLLYLIFVRVCGWLVLLGRSSAAKDLELLVLRHEVTVLRRTQPRPRWDWADRAVLNQTRSRNGGVWPPATTRHPKAT PQDSTCADPSSGYAACQPHDPNLEQTLGTDGPEVPVVCVGTSPLGGLPTIYGYDVEAGQAVATIRRVLESPIDFIDTSNE YANGESERRIGEALRSAAGGPGNVVLATKADPALWATEFPGSRVRESFRESTERLGVDRFEVFYLHDPERFDFGYMTAPG GAVEAMVQLRTDGLATAIGVAGSDISEMRRYVDLGVFDVILNHNRYTLLDRSADALIDHAVNAGLSFINAAPYASGMLAK QVSARPRYQYRAPSPEIVRTTAWLHQECARFHVPLAALALQFSTRDPRISSTVVGVSAPERVDELVENEQREIPSELWDS VRERLVLPPTVT >Mature_411_residues SVRLLYLIFVRVCGWLVLLGRSSAAKDLELLVLRHEVTVLRRTQPRPRWDWADRAVLNQTRSRNGGVWPPATTRHPKATP QDSTCADPSSGYAACQPHDPNLEQTLGTDGPEVPVVCVGTSPLGGLPTIYGYDVEAGQAVATIRRVLESPIDFIDTSNEY ANGESERRIGEALRSAAGGPGNVVLATKADPALWATEFPGSRVRESFRESTERLGVDRFEVFYLHDPERFDFGYMTAPGG AVEAMVQLRTDGLATAIGVAGSDISEMRRYVDLGVFDVILNHNRYTLLDRSADALIDHAVNAGLSFINAAPYASGMLAKQ VSARPRYQYRAPSPEIVRTTAWLHQECARFHVPLAALALQFSTRDPRISSTVVGVSAPERVDELVENEQREIPSELWDSV RERLVLPPTVT
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase family [H]
Homologues:
Organism=Escherichia coli, GI1788070, Length=305, Percent_Identity=25.9016393442623, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081735, Length=261, Percent_Identity=26.0536398467433, Blast_Score=65, Evalue=5e-12, Organism=Drosophila melanogaster, GI24646155, Length=283, Percent_Identity=27.9151943462898, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI24646159, Length=278, Percent_Identity=25.8992805755396, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: =1.1.1.107 [H]
Molecular weight: Translated: 45347; Mature: 45215
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRLLYLIFVRVCGWLVLLGRSSAAKDLELLVLRHEVTVLRRTQPRPRWDWADRAVLNQ CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH TRSRNGGVWPPATTRHPKATPQDSTCADPSSGYAACQPHDPNLEQTLGTDGPEVPVVCVG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCEEEEC TSPLGGLPTIYGYDVEAGQAVATIRRVLESPIDFIDTSNEYANGESERRIGEALRSAAGG CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCC PGNVVLATKADPALWATEFPGSRVRESFRESTERLGVDRFEVFYLHDPERFDFGYMTAPG CCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEECCC GAVEAMVQLRTDGLATAIGVAGSDISEMRRYVDLGVFDVILNHNRYTLLDRSADALIDHA HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCEEEEECCCHHHHHHHH VNAGLSFINAAPYASGMLAKQVSARPRYQYRAPSPEIVRTTAWLHQECARFHVPLAALAL HHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHH QFSTRDPRISSTVVGVSAPERVDELVENEQREIPSELWDSVRERLVLPPTVT HHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SVRLLYLIFVRVCGWLVLLGRSSAAKDLELLVLRHEVTVLRRTQPRPRWDWADRAVLNQ CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH TRSRNGGVWPPATTRHPKATPQDSTCADPSSGYAACQPHDPNLEQTLGTDGPEVPVVCVG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCEEEEC TSPLGGLPTIYGYDVEAGQAVATIRRVLESPIDFIDTSNEYANGESERRIGEALRSAAGG CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCC PGNVVLATKADPALWATEFPGSRVRESFRESTERLGVDRFEVFYLHDPERFDFGYMTAPG CCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEECCC GAVEAMVQLRTDGLATAIGVAGSDISEMRRYVDLGVFDVILNHNRYTLLDRSADALIDHA HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCEEEEECCCHHHHHHHH VNAGLSFINAAPYASGMLAKQVSARPRYQYRAPSPEIVRTTAWLHQECARFHVPLAALAL HHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHH QFSTRDPRISSTVVGVSAPERVDELVENEQREIPSELWDSVRERLVLPPTVT HHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA