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The map label for this gene is rhaS [C]

Identifier: 157964005

GI number: 157964005

Start: 5088869

End: 5089876

Strand: Reverse

Name: rhaS [C]

Synonym: Spea_4194

Alternate gene names: 157964005

Gene position: 5089876-5088869 (Counterclockwise)

Preceding gene: 157964007

Following gene: 157964000

Centisome position: 98.36

GC content: 48.02

Gene sequence:

>1008_bases
ATGAAACGAATCGTAGTGCTAGCGGCCGACAATGCGGTGGCGGGGGGCATTCTGAGTTTTATGGATGTATTCAGTTTCTG
TAATACCTACTGGAAAGTGACTCATCCCGATGCCGATGAGGTGTTATTTGAGTGTGCGATTATTTCGCCCGATGGTGAGC
CGATTAACAGCGATCATAATATGCAGCTGCCAGTCATAGCCCATGATGAAGCCGATCATTACTTTAGTCATGCCGACGCC
TTAGTCGTCGCTTCGGCGACTATCACTAATCGTAAGCAGCTCAACACCTACCTAGATGATTTTCAACCCCATATTGCGAC
CCTAAAAAAATTTGCCCAGACCAATAAACCGATAGCGGCCTATTGTTCGGGCACCTTAATGTTGGCGGCTTCTGGTTTGC
TCGACGATAAGAAGGCCACCTGCGTATGGTGGTTAGCCGAGTTGTTTAGGCGTAGCTTTCCTAGGGTTGATTTATGTAGT
GAGCACGTGGTCATGAACGACGGTCAGTACTATACGGCGGGAGCCACCAGTGCCAACTTGAGTTTGGCGTTGCAACTGGT
ACAAAAATTGGCGGGAGAGCAAATTGCGATGCAGATGGCTAAAGTGCTGCTTATCGATCCGAATCGAACCTCGCAACAAG
CTTTTGTGACCTTAGATGCTGAGCCGCAACATAAAGATGAGCTAGTGACTCGTATTCAAGATTGGATGCAGTTGCACCTT
AAGCATCACTTGCAGTTAGATGACATTGCCGACAAATTTGCCGTGGGAAAGCGCACCTTGATCCGCCGTTTTAAGAGTGC
GGTTAATCAAACGCCTGCCAGCTATATTCAGCGGCTTAGGGTCGATGAGGCTAAGCGCTTACTCGAAACGACTGCGTTCA
GTATAGAGCAGATAGTCGAACAGGTCGGCTATGAGGATGTGAGTTCCTTTAGGAAGCTATTCATACAAACCACAAGCTTG
TCGCCGCGAGCTTATCGCCAAAAGTTTAATACTCATGACTGCTGCTAA

Upstream 100 bases:

>100_bases
TCAACTGACTTCAGTATAAAAACTAGACAAATGGGTTTTAAGTGTCATTATTGACAAAATAAAGGTGAAAAGTGACAGTG
GTATAGAAGGAGGAGCGTTT

Downstream 100 bases:

>100_bases
TGGCTTGTTAGCGCTATGAGTATTGGGGCTATATGGATTTATAGCGAGTTAATTTGAGACTTTAGCTCGTAGCTATTGTC
GGTAACGATTTTCTCTAACA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Activator FtrA; Transcriptional Regulator Arac Family; DJ-1/PfpI Family; AraC Family Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; AraC Family Regulatory Helix-Turn-Helix Protein; ThiJ/PfpI Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; ADPA-Family Transcriptional Regulator; ADPA Family Transcriptional Regulator; AraC Family Transcriptional Regulatory Protein; Helix-Turn-Helix AraC Type; Helix-Turn-Helix Domain-Containing Protein AraC Type; Arac Family Transcriptional Regulator; Transcriptional Regulator Protein; DJ-1/PfpI Family Protein

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKRIVVLAADNAVAGGILSFMDVFSFCNTYWKVTHPDADEVLFECAIISPDGEPINSDHNMQLPVIAHDEADHYFSHADA
LVVASATITNRKQLNTYLDDFQPHIATLKKFAQTNKPIAAYCSGTLMLAASGLLDDKKATCVWWLAELFRRSFPRVDLCS
EHVVMNDGQYYTAGATSANLSLALQLVQKLAGEQIAMQMAKVLLIDPNRTSQQAFVTLDAEPQHKDELVTRIQDWMQLHL
KHHLQLDDIADKFAVGKRTLIRRFKSAVNQTPASYIQRLRVDEAKRLLETTAFSIEQIVEQVGYEDVSSFRKLFIQTTSL
SPRAYRQKFNTHDCC

Sequences:

>Translated_335_residues
MKRIVVLAADNAVAGGILSFMDVFSFCNTYWKVTHPDADEVLFECAIISPDGEPINSDHNMQLPVIAHDEADHYFSHADA
LVVASATITNRKQLNTYLDDFQPHIATLKKFAQTNKPIAAYCSGTLMLAASGLLDDKKATCVWWLAELFRRSFPRVDLCS
EHVVMNDGQYYTAGATSANLSLALQLVQKLAGEQIAMQMAKVLLIDPNRTSQQAFVTLDAEPQHKDELVTRIQDWMQLHL
KHHLQLDDIADKFAVGKRTLIRRFKSAVNQTPASYIQRLRVDEAKRLLETTAFSIEQIVEQVGYEDVSSFRKLFIQTTSL
SPRAYRQKFNTHDCC
>Mature_335_residues
MKRIVVLAADNAVAGGILSFMDVFSFCNTYWKVTHPDADEVLFECAIISPDGEPINSDHNMQLPVIAHDEADHYFSHADA
LVVASATITNRKQLNTYLDDFQPHIATLKKFAQTNKPIAAYCSGTLMLAASGLLDDKKATCVWWLAELFRRSFPRVDLCS
EHVVMNDGQYYTAGATSANLSLALQLVQKLAGEQIAMQMAKVLLIDPNRTSQQAFVTLDAEPQHKDELVTRIQDWMQLHL
KHHLQLDDIADKFAVGKRTLIRRFKSAVNQTPASYIQRLRVDEAKRLLETTAFSIEQIVEQVGYEDVSSFRKLFIQTTSL
SPRAYRQKFNTHDCC

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790339, Length=93, Percent_Identity=34.4086021505376, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37782; Mature: 37782

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVVLAADNAVAGGILSFMDVFSFCNTYWKVTHPDADEVLFECAIISPDGEPINSDHN
CCEEEEEECCCCHHHHHHHHHHHHHHHHHCEEECCCCHHHHHEEEEEECCCCCCCCCCCC
MQLPVIAHDEADHYFSHADALVVASATITNRKQLNTYLDDFQPHIATLKKFAQTNKPIAA
EEEEEEECCCCHHHHHHCCHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YCSGTLMLAASGLLDDKKATCVWWLAELFRRSFPRVDLCSEHVVMNDGQYYTAGATSANL
HHCCHHEEHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEECCCCCCHH
SLALQLVQKLAGEQIAMQMAKVLLIDPNRTSQQAFVTLDAEPQHKDELVTRIQDWMQLHL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
KHHLQLDDIADKFAVGKRTLIRRFKSAVNQTPASYIQRLRVDEAKRLLETTAFSIEQIVE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVGYEDVSSFRKLFIQTTSLSPRAYRQKFNTHDCC
HHCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRIVVLAADNAVAGGILSFMDVFSFCNTYWKVTHPDADEVLFECAIISPDGEPINSDHN
CCEEEEEECCCCHHHHHHHHHHHHHHHHHCEEECCCCHHHHHEEEEEECCCCCCCCCCCC
MQLPVIAHDEADHYFSHADALVVASATITNRKQLNTYLDDFQPHIATLKKFAQTNKPIAA
EEEEEEECCCCHHHHHHCCHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YCSGTLMLAASGLLDDKKATCVWWLAELFRRSFPRVDLCSEHVVMNDGQYYTAGATSANL
HHCCHHEEHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEECCCCCCHH
SLALQLVQKLAGEQIAMQMAKVLLIDPNRTSQQAFVTLDAEPQHKDELVTRIQDWMQLHL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
KHHLQLDDIADKFAVGKRTLIRRFKSAVNQTPASYIQRLRVDEAKRLLETTAFSIEQIVE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVGYEDVSSFRKLFIQTTSLSPRAYRQKFNTHDCC
HHCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA