Click here to switch to the map view.

The map label for this gene is nocR [H]

Identifier: 157963978

GI number: 157963978

Start: 5058192

End: 5059094

Strand: Reverse

Name: nocR [H]

Synonym: Spea_4167

Alternate gene names: 157963978

Gene position: 5059094-5058192 (Counterclockwise)

Preceding gene: 157963979

Following gene: 157963969

Centisome position: 97.77

GC content: 46.95

Gene sequence:

>903_bases
TTGCCAGCAGATTCGAAAATTAAAATTCGCCAGATAGAAGCGTTTCGCTGTTTTATGTTATCGGGCACGGTAACGGGCGC
TGCCGAGCTTATGTATATCTCTCAACCCGCTGTGAGCCGACTCTTATCTGAGCTGGAGTATCGAGTAGGTTTTCCGCTTT
TTGTGCGAACACACAATAAGTTAGAGGCAACGCCGGAGGCAAAATTATTCTATAAGGATGTTAACCGCGTCTTTATTGGC
ATGAATAGTCTAGCCTCTTCGGCCGATGCCATTGCCCGTAATAATCAGGGGCGATTGCGTGTCGGAGTCATGCCTATCTG
TTCTAACAGCTTTATGCCCGATGTGATAGCGGCATTTTTAAGTTTGCACCCCAATGTATCTATTGAGCTGGAGTCGGCAT
CGAGAATTCAGCTGTTGGATATGGTGCGTAGTCATAGAATTGATATCGCCATAACCACCAATGTTGAAGCGGATGAGGAT
GAGTTCGATTGTCGATTCTTACGCAGGCACAGGGCGGTGGTCTTGCTCCATGAGGGGCACCCTCTGGCAGATAAAGATTC
ACTTTCACCGACCGATCTGAAACATGAACGCTTTATGACTTTGGCCTATGGTAGCCCGTTTCGAACCCGAGTCGAGGATG
CGTTTCTGAAGCAGAGCGTTAAGCGCAATATTATTCTCGAAGCGAGAGAGCAGAGTACGCTATTTCAGTTGGTAAGAAAG
GGAGTTGGCATCGCAATTTTAGACCCCTTTGTACTGCATTCTGGTGCCGACGGCATTATAAGTCGACCATTTGAGCCTGT
GACAGAGTGGGAATACCACGTGGTTCAGGCAAAAGGCATTCAAACTCCTAGGATGGTGAATGCTTTCCTAGAGATCTTAT
TTGAGTATTTTGAAAGCCCTTAG

Upstream 100 bases:

>100_bases
CACTATGTAAGATGATGGATTTGCGAGGCGCTGCTCGGTAGTTTATTGTGCTTTTCGCTACTATCACCTGACTATAGCTG
TATCTCATTAGGTGAAATCA

Downstream 100 bases:

>100_bases
CTTTGTATAAGCCCTTAGCGAAATAAAGAGCCCTTAGCGCAATAAAAAGCCTGAAAGCTAATATGAAGAACAGGCAAAAA
AATACCGCAGCAAACTGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPADSKIKIRQIEAFRCFMLSGTVTGAAELMYISQPAVSRLLSELEYRVGFPLFVRTHNKLEATPEAKLFYKDVNRVFIG
MNSLASSADAIARNNQGRLRVGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLDMVRSHRIDIAITTNVEADED
EFDCRFLRRHRAVVLLHEGHPLADKDSLSPTDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
GVGIAILDPFVLHSGADGIISRPFEPVTEWEYHVVQAKGIQTPRMVNAFLEILFEYFESP

Sequences:

>Translated_300_residues
MPADSKIKIRQIEAFRCFMLSGTVTGAAELMYISQPAVSRLLSELEYRVGFPLFVRTHNKLEATPEAKLFYKDVNRVFIG
MNSLASSADAIARNNQGRLRVGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLDMVRSHRIDIAITTNVEADED
EFDCRFLRRHRAVVLLHEGHPLADKDSLSPTDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
GVGIAILDPFVLHSGADGIISRPFEPVTEWEYHVVQAKGIQTPRMVNAFLEILFEYFESP
>Mature_299_residues
PADSKIKIRQIEAFRCFMLSGTVTGAAELMYISQPAVSRLLSELEYRVGFPLFVRTHNKLEATPEAKLFYKDVNRVFIGM
NSLASSADAIARNNQGRLRVGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLDMVRSHRIDIAITTNVEADEDE
FDCRFLRRHRAVVLLHEGHPLADKDSLSPTDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRKG
VGIAILDPFVLHSGADGIISRPFEPVTEWEYHVVQAKGIQTPRMVNAFLEILFEYFESP

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=286, Percent_Identity=28.6713286713287, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI157672245, Length=257, Percent_Identity=22.568093385214, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787530, Length=236, Percent_Identity=25.4237288135593, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788296, Length=227, Percent_Identity=24.6696035242291, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=23.8461538461538, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=23.758865248227, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=272, Percent_Identity=23.1617647058824, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI2367136, Length=266, Percent_Identity=23.6842105263158, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=28.7671232876712, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=25.177304964539, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=22.5806451612903, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693193, Length=129, Percent_Identity=27.906976744186, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33967; Mature: 33835

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADSKIKIRQIEAFRCFMLSGTVTGAAELMYISQPAVSRLLSELEYRVGFPLFVRTHNK
CCCCCCEEEEEEHEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
LEATPEAKLFYKDVNRVFIGMNSLASSADAIARNNQGRLRVGVMPICSNSFMPDVIAAFL
CCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHH
SLHPNVSIELESASRIQLLDMVRSHRIDIAITTNVEADEDEFDCRFLRRHRAVVLLHEGH
HCCCCEEEEECCCCHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCC
PLADKDSLSPTDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
CCCCCCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
GVGIAILDPFVLHSGADGIISRPFEPVTEWEYHVVQAKGIQTPRMVNAFLEILFEYFESP
CCCEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PADSKIKIRQIEAFRCFMLSGTVTGAAELMYISQPAVSRLLSELEYRVGFPLFVRTHNK
CCCCCEEEEEEHEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
LEATPEAKLFYKDVNRVFIGMNSLASSADAIARNNQGRLRVGVMPICSNSFMPDVIAAFL
CCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHH
SLHPNVSIELESASRIQLLDMVRSHRIDIAITTNVEADEDEFDCRFLRRHRAVVLLHEGH
HCCCCEEEEECCCCHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCC
PLADKDSLSPTDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
CCCCCCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
GVGIAILDPFVLHSGADGIISRPFEPVTEWEYHVVQAKGIQTPRMVNAFLEILFEYFESP
CCCEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]