Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 157963691

GI number: 157963691

Start: 4726276

End: 4726659

Strand: Direct

Name: tdcF [C]

Synonym: Spea_3880

Alternate gene names: 157963691

Gene position: 4726276-4726659 (Clockwise)

Preceding gene: 157963690

Following gene: 157963692

Centisome position: 91.34

GC content: 44.53

Gene sequence:

>384_bases
ATGGCAGAGAAAATAATCATCGCGACCGCTAAAGCGCCACAAGCAATTGGCACTTACTCTCAAGCGGTTAAAGTGGGTAG
CACAGTTTATTTATCAGGCCAAATCCCACTTGTTCCAGAGACCATGGAAATGGTTAGCGATGAGTTTGAAGCTCAGGTTG
TGCAAGTCTTTGACAACCTAACTGCCGTTTGTGAAGCCGCTGGCGGCTCATTAAGCGATATCGTAAAGCTAAATATCTTT
ATGACTGACTTGAGCAACTTCGCTACCGTAAATGAAATTATGGGTCGCTACTTTGAGCAACCTTACCCAGCTCGTGCTGC
TATTGGTGTTAAACAACTGCCAAAAGACTCACTGGTTGAGATGGATGGAGTGATGGAGATTTAA

Upstream 100 bases:

>100_bases
CATTCATTTGGCTAACGTGATGCGTCGGATCAGAGTACTTCCAGAGGTACTTCGTACATCGAGAAACCGTTAATTTACTC
AATAAAGACAAGGAAAGATC

Downstream 100 bases:

>100_bases
TCCTCATCAGCCAACCATATGGGCGCTACGGCGCCCATTTTTTATTTAACGTTAGCTATTTAACGTTTGCCACGTTAAAC
CTTGTTTATCGCTCCAACAG

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAEKIIIATAKAPQAIGTYSQAVKVGSTVYLSGQIPLVPETMEMVSDEFEAQVVQVFDNLTAVCEAAGGSLSDIVKLNIF
MTDLSNFATVNEIMGRYFEQPYPARAAIGVKQLPKDSLVEMDGVMEI

Sequences:

>Translated_127_residues
MAEKIIIATAKAPQAIGTYSQAVKVGSTVYLSGQIPLVPETMEMVSDEFEAQVVQVFDNLTAVCEAAGGSLSDIVKLNIF
MTDLSNFATVNEIMGRYFEQPYPARAAIGVKQLPKDSLVEMDGVMEI
>Mature_126_residues
AEKIIIATAKAPQAIGTYSQAVKVGSTVYLSGQIPLVPETMEMVSDEFEAQVVQVFDNLTAVCEAAGGSLSDIVKLNIFM
TDLSNFATVNEIMGRYFEQPYPARAAIGVKQLPKDSLVEMDGVMEI

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=42.741935483871, Blast_Score=105, Evalue=9e-25,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=43.801652892562, Blast_Score=99, Evalue=8e-23,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=32.7586206896552, Blast_Score=67, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=116, Percent_Identity=37.9310344827586, Blast_Score=92, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=78, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=36.3636363636364, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13708; Mature: 13577

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKIIIATAKAPQAIGTYSQAVKVGSTVYLSGQIPLVPETMEMVSDEFEAQVVQVFDNL
CCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TAVCEAAGGSLSDIVKLNIFMTDLSNFATVNEIMGRYFEQPYPARAAIGVKQLPKDSLVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCHHHC
MDGVMEI
CCCCCCC
>Mature Secondary Structure 
AEKIIIATAKAPQAIGTYSQAVKVGSTVYLSGQIPLVPETMEMVSDEFEAQVVQVFDNL
CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TAVCEAAGGSLSDIVKLNIFMTDLSNFATVNEIMGRYFEQPYPARAAIGVKQLPKDSLVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCHHHC
MDGVMEI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]