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The map label for this gene is rpoZ

Identifier: 157963689

GI number: 157963689

Start: 4723845

End: 4724129

Strand: Direct

Name: rpoZ

Synonym: Spea_3878

Alternate gene names: 157963689

Gene position: 4723845-4724129 (Clockwise)

Preceding gene: 157963688

Following gene: 157963690

Centisome position: 91.29

GC content: 50.18

Gene sequence:

>285_bases
ATGGCTCGCGTAACTGTAGAAGATGCCGTAAACCAAATCGGCAACCGTTTTGATATGATTCTGGTTGCAGCGCGTCGTGC
TCGCCAAATCGCTGTTCAGGGTAAAGACCCTATGGTTGAAGAAGAGAACGACAAACCAACGGTTATCGCCCTGCGCGAAA
TCGAGCTAGGTTTAGTCACAGCTGATACTTTGGATGCCGATGAGCGCCAAACAGTTCGTGAACGTGAAGCAGCTGAAATC
GCTGCTGTTGCTGCCATCGCTGAAGGCCGCAACAACGTCATATAA

Upstream 100 bases:

>100_bases
ACGCAGAATGGTATGATTAAAGATCTGTTGGCAGGCTAACTGTCTTCATGTACAATTTTGCGTCATTTTTTCAATCGATA
AAACACTGGAGTTTCCAAAC

Downstream 100 bases:

>100_bases
GGAGTAGAGTCACTTGTATCTGTTTGAAGGTCTCAAGGAGTCTGCCTCAGGTTATTTAGAACCTGAGCAGGTAGAATTAC
TCAAGCAGGCCTATCAGGTG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVTADTLDADERQTVREREAAEI
AAVAAIAEGRNNVI

Sequences:

>Translated_94_residues
MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVTADTLDADERQTVREREAAEI
AAVAAIAEGRNNVI
>Mature_93_residues
ARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVTADTLDADERQTVREREAAEIA
AVAAIAEGRNNVI

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=90, Percent_Identity=71.1111111111111, Blast_Score=102, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_SHEPA (A8H9F1)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001503723.1
- STRING:   A8H9F1
- GeneID:   5664262
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_3878
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- ProtClustDB:   PRK00392
- BioCyc:   SPEA398579:SPEA_3878-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10313; Mature: 10182

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT
CCEEEHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEEECEEEEEE
ADTLDADERQTVREREAAEIAAVAAIAEGRNNVI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT
CEEEHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEEECEEEEEE
ADTLDADERQTVREREAAEIAAVAAIAEGRNNVI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA