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The map label for this gene is dmsB [H]

Identifier: 157963673

GI number: 157963673

Start: 4695484

End: 4696101

Strand: Direct

Name: dmsB [H]

Synonym: Spea_3862

Alternate gene names: 157963673

Gene position: 4695484-4696101 (Clockwise)

Preceding gene: 157963672

Following gene: 157963674

Centisome position: 90.74

GC content: 47.41

Gene sequence:

>618_bases
ATGCAATTAGGATTCTATGTTGATACAGCAATCTGTTCAGGCTGCAAGGCCTGTATGGTCTCCTGTAAAGATAAGAATGA
CCTGAATGTAGGTCGTAACTTCCGCCGCGTATATGAATATGCGGGCGGAAGCTGTACGGATAATGGTAATGGCGTATTTT
CACAATCCGTTTTTGCCTACTACACGTCAATCTCTTGTAATCATTGCAACACCCCAGCTTGTACTACGGCTTGTCCAACT
GGCGCTATGCATAAGCGCGCAGAAGATGGACTGGTCATGATTCATGACGACATCTGTATCGGTTGCTCATCTTGCTCACA
GGCATGTCCATACGACGCGCCTCAACTTGATGAAGCCCGAGGAAAAATGACCAAGTGTGACGGCTGTATTGACAGACTCA
ACGCGGGGAAACAGCCCATGTGTGTTGATAGCTGTATCCATCGAGCATTGGACTTCGGCCCTATCGATGAGTTGCGCGCT
AAATATGGGGATACAGCAGAAATTGCCCCGTTACCGTCAGCAAGCATCACCAAACCAAACTTAATTCTTAAAGTACACCC
TGACGGTCAACCTGTAGGTTCAGGCGCCGGTTCAGTAGTAAATCCAAACGAGGTATAA

Upstream 100 bases:

>100_bases
TGCGCAAATACCCTGACCGACAGTAAGCCTAGTCCGGTTGCTAAGTCATTCCGTTCTAATACTAACCGAGTCAGAGTTTA
CTCGGCATAGGAGAGAAAAT

Downstream 100 bases:

>100_bases
CATGAATACTAAACTTTCTCTTGTAGCTATCCTTCTTGCTGGTGCTATGGTAACTGGCTGTTCTGATGACGATTCAGAAA
CAATATATATCTGTGAAGAT

Product: dimethylsulfoxide reductase subunit B

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQLGFYVDTAICSGCKACMVSCKDKNDLNVGRNFRRVYEYAGGSCTDNGNGVFSQSVFAYYTSISCNHCNTPACTTACPT
GAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDEARGKMTKCDGCIDRLNAGKQPMCVDSCIHRALDFGPIDELRA
KYGDTAEIAPLPSASITKPNLILKVHPDGQPVGSGAGSVVNPNEV

Sequences:

>Translated_205_residues
MQLGFYVDTAICSGCKACMVSCKDKNDLNVGRNFRRVYEYAGGSCTDNGNGVFSQSVFAYYTSISCNHCNTPACTTACPT
GAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDEARGKMTKCDGCIDRLNAGKQPMCVDSCIHRALDFGPIDELRA
KYGDTAEIAPLPSASITKPNLILKVHPDGQPVGSGAGSVVNPNEV
>Mature_205_residues
MQLGFYVDTAICSGCKACMVSCKDKNDLNVGRNFRRVYEYAGGSCTDNGNGVFSQSVFAYYTSISCNHCNTPACTTACPT
GAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDEARGKMTKCDGCIDRLNAGKQPMCVDSCIHRALDFGPIDELRA
KYGDTAEIAPLPSASITKPNLILKVHPDGQPVGSGAGSVVNPNEV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=204, Percent_Identity=58.3333333333333, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1787872, Length=204, Percent_Identity=56.3725490196078, Blast_Score=250, Evalue=4e-68,
Organism=Escherichia coli, GI2367345, Length=185, Percent_Identity=30.8108108108108, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789370, Length=199, Percent_Identity=31.6582914572864, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790326, Length=174, Percent_Identity=30.4597701149425, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787749, Length=164, Percent_Identity=30.4878048780488, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787478, Length=99, Percent_Identity=38.3838383838384, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787740, Length=99, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI226510944, Length=150, Percent_Identity=35.3333333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787963, Length=140, Percent_Identity=29.2857142857143, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 21805; Mature: 21805

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGFYVDTAICSGCKACMVSCKDKNDLNVGRNFRRVYEYAGGSCTDNGNGVFSQSVFAY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
YTSISCNHCNTPACTTACPTGAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDEAR
HEECCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEECCHHHCCCCCCCCCCCHHHH
GKMTKCDGCIDRLNAGKQPMCVDSCIHRALDFGPIDELRAKYGDTAEIAPLPSASITKPN
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LILKVHPDGQPVGSGAGSVVNPNEV
EEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLGFYVDTAICSGCKACMVSCKDKNDLNVGRNFRRVYEYAGGSCTDNGNGVFSQSVFAY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
YTSISCNHCNTPACTTACPTGAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDEAR
HEECCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEECCHHHCCCCCCCCCCCHHHH
GKMTKCDGCIDRLNAGKQPMCVDSCIHRALDFGPIDELRAKYGDTAEIAPLPSASITKPN
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LILKVHPDGQPVGSGAGSVVNPNEV
EEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]