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The map label for this gene is rarD [H]

Identifier: 157963643

GI number: 157963643

Start: 4660109

End: 4660996

Strand: Direct

Name: rarD [H]

Synonym: Spea_3832

Alternate gene names: 157963643

Gene position: 4660109-4660996 (Clockwise)

Preceding gene: 157963642

Following gene: 157963649

Centisome position: 90.06

GC content: 46.17

Gene sequence:

>888_bases
ATGCAAGAAATTGAATACCGTAAAGGCATTATTTATGCAGTTTGCGCCTATACCCTTTGGGGCTTTGCTCCCATATATTT
TAAATTGCTTGATAGCGTCTCTGCTGCCGAGATCTTACTGCATCGCGTGATCTGGTCATTTTTCTTTGTCACGATTTTAA
TCGCACTGTTTGGTGGTTTTGCTCGCTTGCGTCACCTACTCAAACAGCCAAAGCAACTTGCCGTGCTGTGTGTGACTTCC
ATACTTATTGCCGGTAACTGGCTACTATTTATCTGGGCGGTCAACAACGACCACATGCTAGATGCCAGCTTAGGCTATTT
CATTAATCCACTGGTGAATGTGAGTCTCGCCATGATATTCCTCGGTGAGCGCCTGCGTAAACTGCAATGGGCCGCCGTGG
CACTAGCGGCAACAGGGGTAATGATCCAGCTTATCTCCTTTGGATCCATTCCGTTAGTATCGCTGGGCCTTGCCTGTTCA
TTCGCCTTCTATGGCTTGCTACGTAAAAAAGTGAATGTCGACGCCAAGACGGGATTATTGGTAGAAACCGCTATTTTGCT
GCCTATCGCGCTCATATATCTGTTTACGAATATGGGAGATTCATTAAGCCATCTGTTCACTAACGATTTGCGTTTGAATT
TACTCTTAGTTGCAGCGGGGATCGTAACCACAGTTCCGTTACTGTGCTTTGCCTCTGCAGCCGTTAGGATCCCGTTTTCA
ATGCTAGGCTTCTTCCAATACATAGGCCCAAGCATCATGTTTATCCTAGCTATTGCCTTGTTTAACGAGCCCTTCGACGC
AGAGAAAGGCATTACCTTTGCGTTCATTTGGGCAGCCTTGTTCCTCTTTACGCTGGACATGCTATACAAGCGAAAAGCTA
AGAAGTAG

Upstream 100 bases:

>100_bases
TGGCATAACAGCGACTAGCTTTATTAAAACAGCTGCCAACTTGAGTCTAAGGTTAAGCAAGACTACAATCAGCGGCTACT
TCCCTATTTAGCACATTCCA

Downstream 100 bases:

>100_bases
CCCTGATTGGTGTTACTTCAACGGAAAAAGCGAACCAAATGGGTTCGCTTTTTTATCGCTGTTGATTCAGCAGCTTATCC
GGCTCTTGTAGACTCAATAT

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQEIEYRKGIIYAVCAYTLWGFAPIYFKLLDSVSAAEILLHRVIWSFFFVTILIALFGGFARLRHLLKQPKQLAVLCVTS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILLPIALIYLFTNMGDSLSHLFTNDLRLNLLLVAAGIVTTVPLLCFASAAVRIPFS
MLGFFQYIGPSIMFILAIALFNEPFDAEKGITFAFIWAALFLFTLDMLYKRKAKK

Sequences:

>Translated_295_residues
MQEIEYRKGIIYAVCAYTLWGFAPIYFKLLDSVSAAEILLHRVIWSFFFVTILIALFGGFARLRHLLKQPKQLAVLCVTS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILLPIALIYLFTNMGDSLSHLFTNDLRLNLLLVAAGIVTTVPLLCFASAAVRIPFS
MLGFFQYIGPSIMFILAIALFNEPFDAEKGITFAFIWAALFLFTLDMLYKRKAKK
>Mature_295_residues
MQEIEYRKGIIYAVCAYTLWGFAPIYFKLLDSVSAAEILLHRVIWSFFFVTILIALFGGFARLRHLLKQPKQLAVLCVTS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILLPIALIYLFTNMGDSLSHLFTNDLRLNLLLVAAGIVTTVPLLCFASAAVRIPFS
MLGFFQYIGPSIMFILAIALFNEPFDAEKGITFAFIWAALFLFTLDMLYKRKAKK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=57.4324324324324, Blast_Score=352, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32894; Mature: 32894

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]