| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is hslV [H]
Identifier: 157963593
GI number: 157963593
Start: 4597245
End: 4597769
Strand: Direct
Name: hslV [H]
Synonym: Spea_3781
Alternate gene names: 157963593
Gene position: 4597245-4597769 (Clockwise)
Preceding gene: 157963592
Following gene: 157963594
Centisome position: 88.84
GC content: 44.76
Gene sequence:
>525_bases GTGACCACAATCGTATCAGTACGCCGAAATAACCAAGTTGTTATCGCCGGTGATGGCCAAGTTTCTCTCGGTAACACCGT TATGAAAGGCAATGCTAAAAAAGTTCGTCGCTTGTACCACAACAAGGTACTTGCGGGCTTTGCAGGCAGTACAGCCGATG CATTCACCTTATTTGAGCGTTTCGAAGCTAAGCTTGAAATGCACCAAGGTCACCTAATGCGCGCCGCAGTTGAAATGGCT AAAGACTGGCGCTCAGATAAAGTTCTACGCAAACTAGAAGCCCTACTTGCCGTGGCCGACGCTGAATCTTCATTAATCAT TACCGGCAACGGCGATGTTGTTCAGCCTGAAAATGATCTTATTGCGATTGGTTCCGGTGGCGCCTTTGCCCAATCAGCAG CTACTGCACTACTTGAAAACACTGACTTAAGTGCATTAGAAATTGCTGAAAAATCGCTGACAATTGCGGGTAATATTTGC GTATTTACCAACCAATTTAAGACTATTGAAGAATTAAAGTACTAA
Upstream 100 bases:
>100_bases GCAGATCCAGCCTGCCCTTGATATTCAATTCCGCATCCCCATATCTCTATTATCGTCAACCAGCAGGCATAACGCCTCTG GCTAGAGAAGAGGATTTATT
Downstream 100 bases:
>100_bases GCGACTCAGTCGTTTATACGAAAAATGCTGCAAAGCATGAGGAAAGATTATGTCTGAGATGACACCACGTGAAATTGTTC ACGAGCTAGATAGCCACATT
Product: ATP-dependent protease peptidase subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MTTIVSVRRNNQVVIAGDGQVSLGNTVMKGNAKKVRRLYHNKVLAGFAGSTADAFTLFERFEAKLEMHQGHLMRAAVEMA KDWRSDKVLRKLEALLAVADAESSLIITGNGDVVQPENDLIAIGSGGAFAQSAATALLENTDLSALEIAEKSLTIAGNIC VFTNQFKTIEELKY
Sequences:
>Translated_174_residues MTTIVSVRRNNQVVIAGDGQVSLGNTVMKGNAKKVRRLYHNKVLAGFAGSTADAFTLFERFEAKLEMHQGHLMRAAVEMA KDWRSDKVLRKLEALLAVADAESSLIITGNGDVVQPENDLIAIGSGGAFAQSAATALLENTDLSALEIAEKSLTIAGNIC VFTNQFKTIEELKY >Mature_173_residues TTIVSVRRNNQVVIAGDGQVSLGNTVMKGNAKKVRRLYHNKVLAGFAGSTADAFTLFERFEAKLEMHQGHLMRAAVEMAK DWRSDKVLRKLEALLAVADAESSLIITGNGDVVQPENDLIAIGSGGAFAQSAATALLENTDLSALEIAEKSLTIAGNICV FTNQFKTIEELKY
Specific function: Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery [H]
COG id: COG5405
COG function: function code O; ATP-dependent protease HslVU (ClpYQ), peptidase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase T1B family. HslV subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790367, Length=174, Percent_Identity=80.4597701149425, Blast_Score=292, Evalue=7e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022281 - InterPro: IPR001353 [H]
Pfam domain/function: PF00227 Proteasome [H]
EC number: 3.4.25.-
Molecular weight: Translated: 18784; Mature: 18653
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIVSVRRNNQVVIAGDGQVSLGNTVMKGNAKKVRRLYHNKVLAGFAGSTADAFTLFER CCEEEEEECCCEEEEEECCCEEECCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FEAKLEMHQGHLMRAAVEMAKDWRSDKVLRKLEALLAVADAESSLIITGNGDVVQPENDL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCE IAIGSGGAFAQSAATALLENTDLSALEIAEKSLTIAGNICVFTNQFKTIEELKY EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHCEEEECCEEEEECCHHHHHHHCC >Mature Secondary Structure TTIVSVRRNNQVVIAGDGQVSLGNTVMKGNAKKVRRLYHNKVLAGFAGSTADAFTLFER CEEEEEECCCEEEEEECCCEEECCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FEAKLEMHQGHLMRAAVEMAKDWRSDKVLRKLEALLAVADAESSLIITGNGDVVQPENDL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCE IAIGSGGAFAQSAATALLENTDLSALEIAEKSLTIAGNICVFTNQFKTIEELKY EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHCEEEECCEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA