| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is glnD [H]
Identifier: 157963046
GI number: 157963046
Start: 3957552
End: 3960125
Strand: Reverse
Name: glnD [H]
Synonym: Spea_3229
Alternate gene names: 157963046
Gene position: 3960125-3957552 (Counterclockwise)
Preceding gene: 157963048
Following gene: 157963045
Centisome position: 76.53
GC content: 45.07
Gene sequence:
>2574_bases ATGTCTAGTATATTGGAACTGAATTCTCTCTCGGAGTTGAAGTTTCATATAAAAACCTTCGACGAAAAGCTTAACGAGCA GTTTTTAACTCTGCCGGTGCAGACTCTATTAAAGAGGCGCGCTAAGCATATAGACGAAATGTTGGTTTCATTATGGAAGA TGTACAACCTGCATAATACCTCGATGTCGCTTAATGCGGTGGGAGGATATGGTCGAAGGGCGCTGCATCCTAGATCCGAT GTCGATTTAGCCATCATCATAGAGCAAGAGTTATCCCCGCAGCAGCAAGAACAATTATCGCTTTTCCTTACCCACCTCTG GGACTTTGGCTTAGATATAGGTCAAACAGTTAGAACCCTCTCTGAATCGATAGCGTCAGCAAGATCCGATATCACCATTG CCACCAACCTGCTCGATATCCGCTGTTTAGTTGGCTCAAAAAAACATGCGCTGACCATTAAAGAGCAGCTTTATCAAAAT GAGCTGTGGACCAGCCTGTCTTTTTACGATGCCAAAATGGCCGAGCAGCAAGTCAGACACAATAAGGCGCTGAACACTGC ACTGTATTTAGAGCCTAATCTCAAGAACAATCCTGGTGGCCTACGCGATGTACACACCATTATGTGGATCGCACAAAAGC ATTTCTCACTGGCCAATGCCAATGCCCTTAAAACCATAGGATTTTTACAGCAAGATGAAGTCTATGAGCTATTAGAAGCC TATGACTTTATCTGTCGCGTTAGATGGGCATTGCACTGTGTAACGCAATCGGCGCAGGATGTATTGCTGTTTGAGCACCA AGCTGGTGTGGCCGAGTTTATGCAATTTGGCCAAGGTGATAATAGCCAGCTGGCGATTGAGCGTATGATGCGCCAGCTCT TTAGGGCCATGACTCGCGTACGTGAGTTAAATCAGATCATCTGTGACTCTTTTAAGCTCGATACCCTAAACGAAACCGAG CGCGGTAACCTGCAATCCATCGATAAGTATTTCAGCGTATGTAACGGGCTCATTGAGGTGAAATTTACCCAAGCTTTCAT TGATAAGCGTCAGGTCATACGTATGTTCAAGCTGATTGCCGAGAACGATAATATCGATGGCATTGCGCCGCAAACACTGA GATTACTCAGACAGACCCGCCGTGGGCTGCTCGGCGAGTTACAAGATTATCAGGGGTGCCGTGAAGAGTTCTTAGCTATC TTGTCCCATCCTAAGGGCCTACGTAAATGCCTTGGTCTGATGCATCGCTACGGTGTATTAGCGGCATACTGCTCACAGTG GCATGCAATTGAAGGTCAGATGCAGTTTGATATGCACAATGCCTTTACTGTGGATGAGCACACCTTTAAAACGATTCAGT ATATCGACAGCTTTGCACTCAATAAGAAAAACAGCCTCACCTATTCGGTTTATCAAAATATCGGTAATCGGTTTGCACTG GTGTTTGCAACGCTTTGTCATCACCTCTCTGGTAAACAGGCGATAGAGAACAGTGAGTTGAGTGCTATTCAGGCTAAGGA ACTTGCCGAAGAACACCTGTTAAAGGCTTCAACCACGGCGCTTATCTATTGGCTAGTGGCCAATCAAGATTTACTGATTA GCGCAATTCAAACTCAGGATATCAGCGAGCCGGACGTGATTAAGCACTTGGCTAAAACCATAGGATCGCAAGATAAACTT AACGCCCTATTTCTTTTCACCATCGCCGATATGATGGCGACTAACGAAAGCTATTGGAACGATTGGCAGGAGAGCCAGCT AACTCTCTTGTATATGGCGCTTCGTGACGCGTTAAAACAGGGAATAGAAAATATCTTCGAGGTGCGTACCGTCATTCGCG AGAATCAGACGGATGCCAGGGCAGAGCTTGTAAAGGCGGGGATCGATGAGGAGCGTCTAAGCCAGTTCTGGCATAGCTTG CCGAATAATTTCTTCAGTGGTAACTCTGTAGAAGATATCGTTGAGATCAGCCAAGGCCTCCTCGAGGGGGTTGCGGGTAC GACCCGAGTCTTAGTCGGTAAGAATGGTGATAATGGCTTTACCAGTATTTATGTTTATACCGAGGACAGGCCTAAGTTGT TTGTCGACCTGTTTAAGACTTTAGCTAGCTCTAAGCTCAAGGTCAAAGATGCCCAGATGATGCAAACTAAAGATGGTCAA GTGTTGGAGATCATCAAGGTACTGGATCATAAAGATGAGCCAATTGATGATGAACCAAGAATAGAGCAAATCGTTAAGCG CATCTATCGCGCGATTGATCAAAAAGACAGACCTAGGAAGCTAGTTACCCCTAGAGCCTTAAAGAACTTTGATAGTCCTC CAGTGGTTACTGTGCTGCACACCACCAAGAAAAACAGAGCCTTGCTTAAGGTTAATACTTTAGATGACCCTATGTACCTA GAGCAGATCTGTAATTTATTATCTGAGCAGAATCTGAGTATCCACTCGGCAAAAATAAGTACCTTAGGAGAATGCACCGA AAACGTATTCTTGGTATCGAATGCCGAGAAAAGCTCTTTTGGTCATGATGAACAGCTAAAGCTGGTGGATATTATCGAAG AGGAAATCGCTTAA
Upstream 100 bases:
>100_bases GTTTTCTGCGGGCTAATTAGAACGTTGAATGTTGTCATCTACCTTATATGTATTAAGGTATAAGCAAGTGGTTATATAGC GAATAGGAAAAAGCCTTATT
Downstream 100 bases:
>100_bases AAGCTGTAGAATACTCGCTATTGTTCTTGCCGCTAGGGAGAAAGACTTGAAGCTGGTTTTGTTTGATTTTGATGGTACCT TGACCCATCAAGATATGTTC
Product: protein-P-II uridylyltransferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 857; Mature: 856
Protein sequence:
>857_residues MSSILELNSLSELKFHIKTFDEKLNEQFLTLPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSD VDLAIIIEQELSPQQQEQLSLFLTHLWDFGLDIGQTVRTLSESIASARSDITIATNLLDIRCLVGSKKHALTIKEQLYQN ELWTSLSFYDAKMAEQQVRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLANANALKTIGFLQQDEVYELLEA YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETE RGNLQSIDKYFSVCNGLIEVKFTQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAI LSHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKTIQYIDSFALNKKNSLTYSVYQNIGNRFAL VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTALIYWLVANQDLLISAIQTQDISEPDVIKHLAKTIGSQDKL NALFLFTIADMMATNESYWNDWQESQLTLLYMALRDALKQGIENIFEVRTVIRENQTDARAELVKAGIDEERLSQFWHSL PNNFFSGNSVEDIVEISQGLLEGVAGTTRVLVGKNGDNGFTSIYVYTEDRPKLFVDLFKTLASSKLKVKDAQMMQTKDGQ VLEIIKVLDHKDEPIDDEPRIEQIVKRIYRAIDQKDRPRKLVTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYL EQICNLLSEQNLSIHSAKISTLGECTENVFLVSNAEKSSFGHDEQLKLVDIIEEEIA
Sequences:
>Translated_857_residues MSSILELNSLSELKFHIKTFDEKLNEQFLTLPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSD VDLAIIIEQELSPQQQEQLSLFLTHLWDFGLDIGQTVRTLSESIASARSDITIATNLLDIRCLVGSKKHALTIKEQLYQN ELWTSLSFYDAKMAEQQVRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLANANALKTIGFLQQDEVYELLEA YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETE RGNLQSIDKYFSVCNGLIEVKFTQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAI LSHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKTIQYIDSFALNKKNSLTYSVYQNIGNRFAL VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTALIYWLVANQDLLISAIQTQDISEPDVIKHLAKTIGSQDKL NALFLFTIADMMATNESYWNDWQESQLTLLYMALRDALKQGIENIFEVRTVIRENQTDARAELVKAGIDEERLSQFWHSL PNNFFSGNSVEDIVEISQGLLEGVAGTTRVLVGKNGDNGFTSIYVYTEDRPKLFVDLFKTLASSKLKVKDAQMMQTKDGQ VLEIIKVLDHKDEPIDDEPRIEQIVKRIYRAIDQKDRPRKLVTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYL EQICNLLSEQNLSIHSAKISTLGECTENVFLVSNAEKSSFGHDEQLKLVDIIEEEIA >Mature_856_residues SSILELNSLSELKFHIKTFDEKLNEQFLTLPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSDV DLAIIIEQELSPQQQEQLSLFLTHLWDFGLDIGQTVRTLSESIASARSDITIATNLLDIRCLVGSKKHALTIKEQLYQNE LWTSLSFYDAKMAEQQVRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLANANALKTIGFLQQDEVYELLEAY DFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETER GNLQSIDKYFSVCNGLIEVKFTQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAIL SHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKTIQYIDSFALNKKNSLTYSVYQNIGNRFALV FATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTALIYWLVANQDLLISAIQTQDISEPDVIKHLAKTIGSQDKLN ALFLFTIADMMATNESYWNDWQESQLTLLYMALRDALKQGIENIFEVRTVIRENQTDARAELVKAGIDEERLSQFWHSLP NNFFSGNSVEDIVEISQGLLEGVAGTTRVLVGKNGDNGFTSIYVYTEDRPKLFVDLFKTLASSKLKVKDAQMMQTKDGQV LEIIKVLDHKDEPIDDEPRIEQIVKRIYRAIDQKDRPRKLVTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYLE QICNLLSEQNLSIHSAKISTLGECTENVFLVSNAEKSSFGHDEQLKLVDIIEEEIA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=850, Percent_Identity=34, Blast_Score=496, Evalue=1e-141,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 97913; Mature: 97782
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILELNSLSELKFHIKTFDEKLNEQFLTLPVQTLLKRRAKHIDEMLVSLWKMYNLHNT CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SMSLNAVGGYGRRALHPRSDVDLAIIIEQELSPQQQEQLSLFLTHLWDFGLDIGQTVRTL CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH SESIASARSDITIATNLLDIRCLVGSKKHALTIKEQLYQNELWTSLSFYDAKMAEQQVRH HHHHHHHCCCCEEEHHHHEEHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLANANALKTIGFLQQDEVYELLEA HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRV HHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH RELNQIICDSFKLDTLNETERGNLQSIDKYFSVCNGLIEVKFTQAFIDKRQVIRMFKLIA HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAILSHPKGLRKCLGLMHRYGVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAYCSQWHAIEGQMQFDMHNAFTVDEHTFKTIQYIDSFALNKKNSLTYSVYQNIGNRFAL HHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTALIYWLVANQDLLISAIQTQD HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHEEEHHHCC ISEPDVIKHLAKTIGSQDKLNALFLFTIADMMATNESYWNDWQESQLTLLYMALRDALKQ CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH GIENIFEVRTVIRENQTDARAELVKAGIDEERLSQFWHSLPNNFFSGNSVEDIVEISQGL HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LEGVAGTTRVLVGKNGDNGFTSIYVYTEDRPKLFVDLFKTLASSKLKVKDAQMMQTKDGQ HHHCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEECHHHHHHCCCCH VLEIIKVLDHKDEPIDDEPRIEQIVKRIYRAIDQKDRPRKLVTPRALKNFDSPPVVTVLH HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEE TTKKNRALLKVNTLDDPMYLEQICNLLSEQNLSIHSAKISTLGECTENVFLVSNAEKSSF ECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEECCCCCCC GHDEQLKLVDIIEEEIA CCCCCHHHHHHHHHHCC >Mature Secondary Structure SSILELNSLSELKFHIKTFDEKLNEQFLTLPVQTLLKRRAKHIDEMLVSLWKMYNLHNT CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SMSLNAVGGYGRRALHPRSDVDLAIIIEQELSPQQQEQLSLFLTHLWDFGLDIGQTVRTL CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH SESIASARSDITIATNLLDIRCLVGSKKHALTIKEQLYQNELWTSLSFYDAKMAEQQVRH HHHHHHHCCCCEEEHHHHEEHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLANANALKTIGFLQQDEVYELLEA HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRV HHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH RELNQIICDSFKLDTLNETERGNLQSIDKYFSVCNGLIEVKFTQAFIDKRQVIRMFKLIA HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAILSHPKGLRKCLGLMHRYGVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAYCSQWHAIEGQMQFDMHNAFTVDEHTFKTIQYIDSFALNKKNSLTYSVYQNIGNRFAL HHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTALIYWLVANQDLLISAIQTQD HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHEEEHHHCC ISEPDVIKHLAKTIGSQDKLNALFLFTIADMMATNESYWNDWQESQLTLLYMALRDALKQ CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH GIENIFEVRTVIRENQTDARAELVKAGIDEERLSQFWHSLPNNFFSGNSVEDIVEISQGL HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LEGVAGTTRVLVGKNGDNGFTSIYVYTEDRPKLFVDLFKTLASSKLKVKDAQMMQTKDGQ HHHCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEECHHHHHHCCCCH VLEIIKVLDHKDEPIDDEPRIEQIVKRIYRAIDQKDRPRKLVTPRALKNFDSPPVVTVLH HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEE TTKKNRALLKVNTLDDPMYLEQICNLLSEQNLSIHSAKISTLGECTENVFLVSNAEKSSF ECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEECCCCCCC GHDEQLKLVDIIEEEIA CCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA