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The map label for this gene is secD [H]

Identifier: 157962889

GI number: 157962889

Start: 3766056

End: 3767870

Strand: Reverse

Name: secD [H]

Synonym: Spea_3071

Alternate gene names: 157962889

Gene position: 3767870-3766056 (Counterclockwise)

Preceding gene: 157962890

Following gene: 157962888

Centisome position: 72.81

GC content: 47.44

Gene sequence:

>1815_bases
ATGAGAGAACAGAAAAATACCACTATTTTGAACCACTACTCAGCATGGAAATATGTATTGTTAGTGGTCACTATCATCAT
CATGTTGTTCAGCGCGCTTCCGACCTTTTTTGGTGAGGATGCAGCGGTTCAGATCAGTAAAGAAGCCGGTTTAAAGGTCA
ATGCGTTAGAGCTTCACCAATTACTGATTGCCCAAGGGGTCAAAGTTAAGCGTATCGATCAAACTTCTGGGCAGACGCTG
ATTGTAATAGATGATAACTCGCAACAGAGTCAGCTTAAATCATTCCTTAGCAACCAGGTCAAAGACCCGACAGAGATAAC
TTTGACCTTAGCGCCGGCAGCGCCAAACTGGTTATTATCCCTGGGCTTCTCGCCAATTAAGCTAGGGCTCGATCTGCGCG
GGGGAGTGCAGTTCTTGCTTGATGTGGAGATTGAGCCTGTCTATAAGCTGCAATACAACACCTTTATTGAATCGGTTAGG
CAGTTTGTACGTCAAGAGGCTTTATATGGTGTGACCGTTCAGCAGCAAGTCGATGGCAATGTGCAAATTTCGGCTCAAGA
ACTCGAGCAAAGAGGGGCTGTCAGGCAGTTTATCAATAAACAATACCCTAATTGGCAAGTTTCAAACTCAGGTGAGCAGT
CTTTGAGTGTTGGTATGACTGAAGCCGAGAAGATTACTATCCGCGATCTCACCGTTAAACAAAACTTGCAGATCATGCGC
AGCCGTATTGAGCAGTTAGGGATCACTGAAGCAGTCGTGCAGCGTCAAGGTGAACACCGCATCCGTATCGAACTGCCTGG
AGTACAAGATCCCGCCGCGGCCAAGTCTGTGATTGGCGCCACTGCAAGCCTTGCTTTTTATCAGGTGAAGCAGCCGGGTT
CTGTCAACGCAAAGACACTTAAAGATGAGCAAGGTAAGCCAGTTTATGTGGCAAGACGAGCGGTTTTAGGCGGCGAGCAT
ATCGTCGATGCTAGGGCATCCCTTGGCGAGATGGGCTTACCTGAAGTGGTGATCCATTTAGACAGGGAAGGTGGAAGTAT
GATGTCTGACTTTTCTCGGGACAATATCGGTAAGCCGATGGCGACTTCTTACAGTGAATATAGCCGTGATGACAATGGTC
AAATTAGGCAAACAACTGAAGTCATAAGTGTCGCGACCATTCAAGCGCAATTGGGCGATCGCTTTAGTATTACTGGCGCT
GGGGATTACGCCGAGGCTCAGCAGCTAGCGCTTTTACTCAGAGCAGGCTCAATGACAGCCCCTGTGACCATTGTTGAGGA
GCGAACCATCGGCCCAAGTCTTGGTGAAGAAAACATTACCAATGGTTTCTCCGCACTTGCTTTAGGCATGGGAGTCACCT
TGCTGTTTATGGGGCTTTGGTATCGCCGTTTAGGCTGGATAGCGAACGTAGCGCTAGTCGCCAACATGATCCTTATTTTT
GGTCTTATGGCACTGATCCCTGGCGCGGTTTTAACATTGCCGGGTATTGCTGGCCTAGTGTTAACCGTCGGCATGGCTGT
TGATACCAATGTACTTATTTTTGAGCGAATTAAAGATAAGTTAAAAGAAGGGCGTAGCTTTGCCCACGCGATAGACAGAG
GCTTTGATAGTGCATTTTCAACCATTGTTGACGCTAACTTCACCACAATGATCACTGCCGTGGTGCTTTACGCCATAGGT
AATGGCCCTATTCAGGGCTTTGCCCTAACCCTAGGTTTAGGTCTTTTAACCAGTATGTTTACCGGAATATTTGCGTCTCG
TGCGCTTGTTAACTGGGCATATGGTCGTGATTTTAGTCGTAACGTGAAGGTGTAA

Upstream 100 bases:

>100_bases
ATTACCGCGAGGTTGCTCTGCTCCTGCCCACCATTACTGGTTGAAGCGGGAAACAGCAAGTCTTCATCGCGTTTTAGGCA
ATTTAAAGAGCAAAAAAATT

Downstream 100 bases:

>100_bases
TATGGAATTTATTAATATGAGTAACTTAAGCAAGTTAACCAAAGCACGTTACCTATCGAGTGTGTTCTCGCTACTGATCA
TGCTTGCTTCAATTGGCATC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MREQKNTTILNHYSAWKYVLLVVTIIIMLFSALPTFFGEDAAVQISKEAGLKVNALELHQLLIAQGVKVKRIDQTSGQTL
IVIDDNSQQSQLKSFLSNQVKDPTEITLTLAPAAPNWLLSLGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVR
QFVRQEALYGVTVQQQVDGNVQISAQELEQRGAVRQFINKQYPNWQVSNSGEQSLSVGMTEAEKITIRDLTVKQNLQIMR
SRIEQLGITEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVKQPGSVNAKTLKDEQGKPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPMATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGA
GDYAEAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYRRLGWIANVALVANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRDFSRNVKV

Sequences:

>Translated_604_residues
MREQKNTTILNHYSAWKYVLLVVTIIIMLFSALPTFFGEDAAVQISKEAGLKVNALELHQLLIAQGVKVKRIDQTSGQTL
IVIDDNSQQSQLKSFLSNQVKDPTEITLTLAPAAPNWLLSLGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVR
QFVRQEALYGVTVQQQVDGNVQISAQELEQRGAVRQFINKQYPNWQVSNSGEQSLSVGMTEAEKITIRDLTVKQNLQIMR
SRIEQLGITEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVKQPGSVNAKTLKDEQGKPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPMATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGA
GDYAEAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYRRLGWIANVALVANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRDFSRNVKV
>Mature_604_residues
MREQKNTTILNHYSAWKYVLLVVTIIIMLFSALPTFFGEDAAVQISKEAGLKVNALELHQLLIAQGVKVKRIDQTSGQTL
IVIDDNSQQSQLKSFLSNQVKDPTEITLTLAPAAPNWLLSLGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVR
QFVRQEALYGVTVQQQVDGNVQISAQELEQRGAVRQFINKQYPNWQVSNSGEQSLSVGMTEAEKITIRDLTVKQNLQIMR
SRIEQLGITEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVKQPGSVNAKTLKDEQGKPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPMATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGA
GDYAEAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYRRLGWIANVALVANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRDFSRNVKV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=609, Percent_Identity=43.8423645320197, Blast_Score=508, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65969; Mature: 65969

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREQKNTTILNHYSAWKYVLLVVTIIIMLFSALPTFFGEDAAVQISKEAGLKVNALELHQ
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHH
LLIAQGVKVKRIDQTSGQTLIVIDDNSQQSQLKSFLSNQVKDPTEITLTLAPAAPNWLLS
HHHHCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
LGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVRQFVRQEALYGVTVQQQVDGN
CCCCEEEECEEECCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
VQISAQELEQRGAVRQFINKQYPNWQVSNSGEQSLSVGMTEAEKITIRDLTVKQNLQIMR
EEEEHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHEECCCCCCEEEEEEEHHHHHHHHHH
SRIEQLGITEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVKQPGSVNAKTL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCHHC
KDEQGKPVYVARRAVLGGEHIVDARASLGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPM
CCCCCCEEEEEHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCC
ATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGAGDYAEAQQLALLLRAGSMTA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYRRLGWIANVALVANMILIF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRDFSR
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVKV
CCCC
>Mature Secondary Structure
MREQKNTTILNHYSAWKYVLLVVTIIIMLFSALPTFFGEDAAVQISKEAGLKVNALELHQ
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHH
LLIAQGVKVKRIDQTSGQTLIVIDDNSQQSQLKSFLSNQVKDPTEITLTLAPAAPNWLLS
HHHHCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
LGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVRQFVRQEALYGVTVQQQVDGN
CCCCEEEECEEECCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
VQISAQELEQRGAVRQFINKQYPNWQVSNSGEQSLSVGMTEAEKITIRDLTVKQNLQIMR
EEEEHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHEECCCCCCEEEEEEEHHHHHHHHHH
SRIEQLGITEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVKQPGSVNAKTL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCHHC
KDEQGKPVYVARRAVLGGEHIVDARASLGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPM
CCCCCCEEEEEHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCC
ATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGAGDYAEAQQLALLLRAGSMTA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYRRLGWIANVALVANMILIF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRDFSR
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVKV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]