Click here to switch to the map view.

The map label for this gene is pomA [H]

Identifier: 157962806

GI number: 157962806

Start: 3660370

End: 3661137

Strand: Reverse

Name: pomA [H]

Synonym: Spea_2988

Alternate gene names: 157962806

Gene position: 3661137-3660370 (Counterclockwise)

Preceding gene: 157962810

Following gene: 157962805

Centisome position: 70.75

GC content: 43.36

Gene sequence:

>768_bases
TTGGATTTAGCAACCCTGATAGGACTTATTGGCGCATTTGCCTTCGTTATCATGGCAATGGTCAGTGGTGGCGGTATTGG
CATTTTTATCAATGTGCCTTCGATTCTTATTGTTATGATAGGTACACTGTTTGTTGTCATGATGAAGTACAACCTTAAAC
AGTTTTTAGGCTCAGCTAAGATTGCAGCCAAAGCCTTTATCTTCAAGCTAGATAAACCAGAAGATCTTATCGAACAATCT
ATCTCAATGGCCGATGCTGCGCGTAAAGGGGGCTTCTTAGCTTTAGAAGAGGCGGAGATCAGTAATAGCTTTATGCAAAA
AGCGGTTGATATGCTGGTTGATGGTCACGATGGCGATGTAGTGCGAGACGCTCTGGAAAAGGACATCGCTCTGACTGAAG
AACGTCATAGAACCGGCATAGGGATTTTTAAATCTATCGGTGATGTGGCGCCAGCTATGGGGATGATCGGTACCTTGATT
GGACTAGTTGGCATGCTATCTAATATGGATGACCCCAAGTCTATTGGTCCTGCGATGGCAGTTGCACTACTAACCACATT
ATATGGTGCAGTCGTTGCTAACATGGTCGCATTACCTATTGCCGATAAATTATCTCTTAGAATGAATGAAGAGATGCTAA
ACCGTAACCTGATCATGGATGCGGTTTTGGCGATTCAAGACGGTCAGAACCCACGCGTGATTGAAGGTTTCCTCAAGAAT
TACTTATCTGAAAAATCGAGAAAAATAGATACCTTGGAAGGGGCGTAA

Upstream 100 bases:

>100_bases
GCATAATATTGTCGCTACTTATTTAATTGTTTGTATTTAGGTAGCAATTAGCATTCGAGGCTGTGGTAGACAGTGTTTTG
ATTGGTATTGAGGAGCGGTT

Downstream 100 bases:

>100_bases
GCGGATGGCTAAAAAAGCCAAATGTGATTGTCCGCCTGCAGGTGCGCCGCTTTGGTTGGCAACATTTGCCGACTTGATGT
CGTTGCTGATGTGTTTCTTC

Product: flagellar motor protein PomA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MDLATLIGLIGAFAFVIMAMVSGGGIGIFINVPSILIVMIGTLFVVMMKYNLKQFLGSAKIAAKAFIFKLDKPEDLIEQS
ISMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGDVVRDALEKDIALTEERHRTGIGIFKSIGDVAPAMGMIGTLI
GLVGMLSNMDDPKSIGPAMAVALLTTLYGAVVANMVALPIADKLSLRMNEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN
YLSEKSRKIDTLEGA

Sequences:

>Translated_255_residues
MDLATLIGLIGAFAFVIMAMVSGGGIGIFINVPSILIVMIGTLFVVMMKYNLKQFLGSAKIAAKAFIFKLDKPEDLIEQS
ISMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGDVVRDALEKDIALTEERHRTGIGIFKSIGDVAPAMGMIGTLI
GLVGMLSNMDDPKSIGPAMAVALLTTLYGAVVANMVALPIADKLSLRMNEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN
YLSEKSRKIDTLEGA
>Mature_255_residues
MDLATLIGLIGAFAFVIMAMVSGGGIGIFINVPSILIVMIGTLFVVMMKYNLKQFLGSAKIAAKAFIFKLDKPEDLIEQS
ISMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGDVVRDALEKDIALTEERHRTGIGIFKSIGDVAPAMGMIGTLI
GLVGMLSNMDDPKSIGPAMAVALLTTLYGAVVANMVALPIADKLSLRMNEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN
YLSEKSRKIDTLEGA

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 27340; Mature: 27340

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLATLIGLIGAFAFVIMAMVSGGGIGIFINVPSILIVMIGTLFVVMMKYNLKQFLGSAK
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAKAFIFKLDKPEDLIEQSISMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGDV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHH
VRDALEKDIALTEERHRTGIGIFKSIGDVAPAMGMIGTLIGLVGMLSNMDDPKSIGPAMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VALLTTLYGAVVANMVALPIADKLSLRMNEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YLSEKSRKIDTLEGA
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLATLIGLIGAFAFVIMAMVSGGGIGIFINVPSILIVMIGTLFVVMMKYNLKQFLGSAK
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAKAFIFKLDKPEDLIEQSISMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGDV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHH
VRDALEKDIALTEERHRTGIGIFKSIGDVAPAMGMIGTLIGLVGMLSNMDDPKSIGPAMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VALLTTLYGAVVANMVALPIADKLSLRMNEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YLSEKSRKIDTLEGA
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]