| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is fyuA [H]
Identifier: 157962662
GI number: 157962662
Start: 3467818
End: 3470160
Strand: Reverse
Name: fyuA [H]
Synonym: Spea_2843
Alternate gene names: 157962662
Gene position: 3470160-3467818 (Counterclockwise)
Preceding gene: 157962664
Following gene: 157962661
Centisome position: 67.06
GC content: 41.19
Gene sequence:
>2343_bases ATGTATAAAATCAAACCAATTGTTACGGCTATTTCATTCGCTATGGCTAGCTCTTTGTCGCCAGTTATAGCACAAGAAAA AACAGAAGATGAAACCGTCAATGACTCAGAAATTGAAGTAATTTCTGTTATGGCAACGAAACGTGCACAATCTATTCAAG AAGTGCCTATTTCTGTGGTCGCCTTCAGTGGTGAAGACATGGTTAAATCAGGCATAGAAGAGGTGGCTGATCTTGGCGCA TTTACCCCTAATTTATATGTATCAAAATCAAGTATGCAAGTTAGTCAGACTATAGGTATTCGTGGTGTAGGCACCTCTTC TAACGCCGCTTTAGAGCCAAGTGTTGCCACCTACATTGATGGGGTATATATGCCTCGGCCTGGTGCTTTACTGGGATCAT TTACAGATATTGAAATGGTTGAAGTATTACGTGGCCCGCAAGGGACATTGTTCGGTCGTAATGCGTCGATTGGTGTGGTG AATATACGAAGTAAATCCCCAGAGCTTGGTGAAAATTATACTGATATCTCCATGGGCGTAGGTAACTTTGGCGCACTAGA TACCGCTATTACGGCCAATGCTAGCTTAACCAATAACTTAGCGGTGCGAGGTAACTTAAACTATAGCGCTGATGACGGTT ACGGAGAAAACTTATACGATGGAAACGACAAGTTAGGTGAGAATGACAGTAGCCTAGCAAGATTATCTTTCCTTTATCAA GCGTCAGATGATTTTAATGCCTTAGTAAAATTTGATTATCAAAAGCTTAACGGTACGGGGTCACCGATAGAAGTTTTACC TGAATCAGCAACACCAGAAAGGCTTCAAGTGCTCAATTACTTAGGAGCAGTGCCTGATTTATCGGGGATAGATGGGGTTG TTAATCAAGTCCATGACGATAGTATGGAAAGTTCCCAGTGGGGCACCATGCTGGAAATGAATTGGAACAACCTGCTTACA GATTATTCTATTAAATCAATAACTTCATATAGAGATTGGAGTAACAATACCCTCGAAGGTGATATAACAAGGCTACCACT TGATTTAGCCGCCAGACAATCAGATTATTCTAGCCGTTCATTTAGCCAAGAGTTACAGTTTATTTCGCCAATTGGTGAAA CATACGACTACATTACCGGTGTGTATTTTAGCAAAGAGAGTTATAGCATTGATCAAACCTTTCATTTAGGTGCGGCTTTC TGTCCTGTTGGCGTTGGCGCATCGCTTGCTGGAATGCCACCCGCTCTTATCCAAGCGACAATCACTGCTTGTTTAGCAAT GCCGCAAGAAAATGCAACCCCTGCAGCTTTCTCACAAACAACAGAATCCTTGGCGGCTTTCTACCAAGGTACTTGGCACT TGAATGATAAACTAGATATTACTGCAGGTATTCGATACACCGACGATAGTAAAAGTGCTGATATGCTGGTCGCACCAACA AACCTTGTCGCTGGCGCTCTTTTAGCAGGAGCAGAAGATCATCAGCTTAGCTTTGATGACTCACAAGTGACTTGGTTATT AAACAGTAAATACCAGTTTGACCAAGACTTAATGATGTTTGCAACAGTTTCAACTGGTTTCAAATCGGGTGGCTTTAATT CTGTTATGACACAAGGCGGACTGACGGCCGATGAGCGAACAATAGACTCAGAAGAAGTAATTAATTATGAAATTGGGGCA AGATCTACCTTATTTGAAGGGGTCATGACAACTAATGCTACATTGTACCGAACCGAAATAGATAACTTTCAAGACCGCTC TTTTAAAGGCTTAAACTTTATTACCAGTAATGTTGGTAAATTAAGGCAGCAAGGGTTAGAGCTCGAAATGAACGTTTATC CCACCGATGAATTAACCTTGAGAGCTTCATATGCTTATTTAGACTCAGCATTTCTTGATTACAAAGACGCAACCAACCTC CCGGGTATACCCGGTCCACAAGATTTAACAGGAACACCGAATAATCGTTCCCCTAAAAATCAATTGAGTGCCTTTGCTGA ATATGCGGATACGTTTTCAAGTGCGAATTTAGGTTGGTATGCACGTATTGAATCAAATTGGCAAGATGATTCTAATGTTG GCTCAACTACAAATAATAATCCTCAGGATATTCAAGAAGCTTTTGCTTTAACCAATATCAGACTTGGGCTTTTAGGCAGC AATGAGGATTGGAGTGTGCAACTTTATGCTGAAAATGTGACTAATGAATCTTATTGTCAAAATACCTTTAACCAACCTTT TGGTGATCAGTTTGGTACGGTAAGCAATGGTGGCACACTTATTCGATGTGTCATGGGAACACCAAGGACCTTTGGTCTTC GCGCTAGCTACCACTTTGAATAA
Upstream 100 bases:
>100_bases TGTTTTGCATGGGTAGCTCAATATAACTCATTATTAATCATGAGTGAAAGAGGGTAGGTTCAAAACAGAACGAAAATTAT TCAAATTGGGGTTAATAATA
Downstream 100 bases:
>100_bases GTTTTTTCGTTCATCACTTGGGCGTTAGGGGTACTTAGTACCCCATTTTTCTATCATTTTAGGGGGTTTGTGAGCAAAAC TAAACCCGCTGTTAAAGTCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 780; Mature: 780
Protein sequence:
>780_residues MYKIKPIVTAISFAMASSLSPVIAQEKTEDETVNDSEIEVISVMATKRAQSIQEVPISVVAFSGEDMVKSGIEEVADLGA FTPNLYVSKSSMQVSQTIGIRGVGTSSNAALEPSVATYIDGVYMPRPGALLGSFTDIEMVEVLRGPQGTLFGRNASIGVV NIRSKSPELGENYTDISMGVGNFGALDTAITANASLTNNLAVRGNLNYSADDGYGENLYDGNDKLGENDSSLARLSFLYQ ASDDFNALVKFDYQKLNGTGSPIEVLPESATPERLQVLNYLGAVPDLSGIDGVVNQVHDDSMESSQWGTMLEMNWNNLLT DYSIKSITSYRDWSNNTLEGDITRLPLDLAARQSDYSSRSFSQELQFISPIGETYDYITGVYFSKESYSIDQTFHLGAAF CPVGVGASLAGMPPALIQATITACLAMPQENATPAAFSQTTESLAAFYQGTWHLNDKLDITAGIRYTDDSKSADMLVAPT NLVAGALLAGAEDHQLSFDDSQVTWLLNSKYQFDQDLMMFATVSTGFKSGGFNSVMTQGGLTADERTIDSEEVINYEIGA RSTLFEGVMTTNATLYRTEIDNFQDRSFKGLNFITSNVGKLRQQGLELEMNVYPTDELTLRASYAYLDSAFLDYKDATNL PGIPGPQDLTGTPNNRSPKNQLSAFAEYADTFSSANLGWYARIESNWQDDSNVGSTTNNNPQDIQEAFALTNIRLGLLGS NEDWSVQLYAENVTNESYCQNTFNQPFGDQFGTVSNGGTLIRCVMGTPRTFGLRASYHFE
Sequences:
>Translated_780_residues MYKIKPIVTAISFAMASSLSPVIAQEKTEDETVNDSEIEVISVMATKRAQSIQEVPISVVAFSGEDMVKSGIEEVADLGA FTPNLYVSKSSMQVSQTIGIRGVGTSSNAALEPSVATYIDGVYMPRPGALLGSFTDIEMVEVLRGPQGTLFGRNASIGVV NIRSKSPELGENYTDISMGVGNFGALDTAITANASLTNNLAVRGNLNYSADDGYGENLYDGNDKLGENDSSLARLSFLYQ ASDDFNALVKFDYQKLNGTGSPIEVLPESATPERLQVLNYLGAVPDLSGIDGVVNQVHDDSMESSQWGTMLEMNWNNLLT DYSIKSITSYRDWSNNTLEGDITRLPLDLAARQSDYSSRSFSQELQFISPIGETYDYITGVYFSKESYSIDQTFHLGAAF CPVGVGASLAGMPPALIQATITACLAMPQENATPAAFSQTTESLAAFYQGTWHLNDKLDITAGIRYTDDSKSADMLVAPT NLVAGALLAGAEDHQLSFDDSQVTWLLNSKYQFDQDLMMFATVSTGFKSGGFNSVMTQGGLTADERTIDSEEVINYEIGA RSTLFEGVMTTNATLYRTEIDNFQDRSFKGLNFITSNVGKLRQQGLELEMNVYPTDELTLRASYAYLDSAFLDYKDATNL PGIPGPQDLTGTPNNRSPKNQLSAFAEYADTFSSANLGWYARIESNWQDDSNVGSTTNNNPQDIQEAFALTNIRLGLLGS NEDWSVQLYAENVTNESYCQNTFNQPFGDQFGTVSNGGTLIRCVMGTPRTFGLRASYHFE >Mature_780_residues MYKIKPIVTAISFAMASSLSPVIAQEKTEDETVNDSEIEVISVMATKRAQSIQEVPISVVAFSGEDMVKSGIEEVADLGA FTPNLYVSKSSMQVSQTIGIRGVGTSSNAALEPSVATYIDGVYMPRPGALLGSFTDIEMVEVLRGPQGTLFGRNASIGVV NIRSKSPELGENYTDISMGVGNFGALDTAITANASLTNNLAVRGNLNYSADDGYGENLYDGNDKLGENDSSLARLSFLYQ ASDDFNALVKFDYQKLNGTGSPIEVLPESATPERLQVLNYLGAVPDLSGIDGVVNQVHDDSMESSQWGTMLEMNWNNLLT DYSIKSITSYRDWSNNTLEGDITRLPLDLAARQSDYSSRSFSQELQFISPIGETYDYITGVYFSKESYSIDQTFHLGAAF CPVGVGASLAGMPPALIQATITACLAMPQENATPAAFSQTTESLAAFYQGTWHLNDKLDITAGIRYTDDSKSADMLVAPT NLVAGALLAGAEDHQLSFDDSQVTWLLNSKYQFDQDLMMFATVSTGFKSGGFNSVMTQGGLTADERTIDSEEVINYEIGA RSTLFEGVMTTNATLYRTEIDNFQDRSFKGLNFITSNVGKLRQQGLELEMNVYPTDELTLRASYAYLDSAFLDYKDATNL PGIPGPQDLTGTPNNRSPKNQLSAFAEYADTFSSANLGWYARIESNWQDDSNVGSTTNNNPQDIQEAFALTNIRLGLLGS NEDWSVQLYAENVTNESYCQNTFNQPFGDQFGTVSNGGTLIRCVMGTPRTFGLRASYHFE
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84885; Mature: 84885
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKIKPIVTAISFAMASSLSPVIAQEKTEDETVNDSEIEVISVMATKRAQSIQEVPISVV CCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCEEEE AFSGEDMVKSGIEEVADLGAFTPNLYVSKSSMQVSQTIGIRGVGTSSNAALEPSVATYID EECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCEEECCCCCCCCCCCCHHHHHC GVYMPRPGALLGSFTDIEMVEVLRGPQGTLFGRNASIGVVNIRSKSPELGENYTDISMGV CEECCCCCHHHCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECC GNFGALDTAITANASLTNNLAVRGNLNYSADDGYGENLYDGNDKLGENDSSLARLSFLYQ CCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEE ASDDFNALVKFDYQKLNGTGSPIEVLPESATPERLQVLNYLGAVPDLSGIDGVVNQVHDD CCCCCCEEEEEEHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC SMESSQWGTMLEMNWNNLLTDYSIKSITSYRDWSNNTLEGDITRLPLDLAARQSDYSSRS CCCCCCCCEEEEECCCHHCCCCCHHHHHHHCCCCCCCCCCCEEECCHHHHHCCCCCCHHH FSQELQFISPIGETYDYITGVYFSKESYSIDQTFHLGAAFCPVGVGASLAGMPPALIQAT HHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHH ITACLAMPQENATPAAFSQTTESLAAFYQGTWHLNDKLDITAGIRYTDDSKSADMLVAPT HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCEEEEEEEEEECCCCCCCCEEEECH NLVAGALLAGAEDHQLSFDDSQVTWLLNSKYQFDQDLMMFATVSTGFKSGGFNSVMTQGG HHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCC LTADERTIDSEEVINYEIGARSTLFEGVMTTNATLYRTEIDNFQDRSFKGLNFITSNVGK CCCCCCCCCHHHHEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHH LRQQGLELEMNVYPTDELTLRASYAYLDSAFLDYKDATNLPGIPGPQDLTGTPNNRSPKN HHHCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH QLSAFAEYADTFSSANLGWYARIESNWQDDSNVGSTTNNNPQDIQEAFALTNIRLGLLGS HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECC NEDWSVQLYAENVTNESYCQNTFNQPFGDQFGTVSNGGTLIRCVMGTPRTFGLRASYHFE CCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCC >Mature Secondary Structure MYKIKPIVTAISFAMASSLSPVIAQEKTEDETVNDSEIEVISVMATKRAQSIQEVPISVV CCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCEEEE AFSGEDMVKSGIEEVADLGAFTPNLYVSKSSMQVSQTIGIRGVGTSSNAALEPSVATYID EECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCEEECCCCCCCCCCCCHHHHHC GVYMPRPGALLGSFTDIEMVEVLRGPQGTLFGRNASIGVVNIRSKSPELGENYTDISMGV CEECCCCCHHHCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECC GNFGALDTAITANASLTNNLAVRGNLNYSADDGYGENLYDGNDKLGENDSSLARLSFLYQ CCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEE ASDDFNALVKFDYQKLNGTGSPIEVLPESATPERLQVLNYLGAVPDLSGIDGVVNQVHDD CCCCCCEEEEEEHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC SMESSQWGTMLEMNWNNLLTDYSIKSITSYRDWSNNTLEGDITRLPLDLAARQSDYSSRS CCCCCCCCEEEEECCCHHCCCCCHHHHHHHCCCCCCCCCCCEEECCHHHHHCCCCCCHHH FSQELQFISPIGETYDYITGVYFSKESYSIDQTFHLGAAFCPVGVGASLAGMPPALIQAT HHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHH ITACLAMPQENATPAAFSQTTESLAAFYQGTWHLNDKLDITAGIRYTDDSKSADMLVAPT HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCEEEEEEEEEECCCCCCCCEEEECH NLVAGALLAGAEDHQLSFDDSQVTWLLNSKYQFDQDLMMFATVSTGFKSGGFNSVMTQGG HHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCC LTADERTIDSEEVINYEIGARSTLFEGVMTTNATLYRTEIDNFQDRSFKGLNFITSNVGK CCCCCCCCCHHHHEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHH LRQQGLELEMNVYPTDELTLRASYAYLDSAFLDYKDATNLPGIPGPQDLTGTPNNRSPKN HHHCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH QLSAFAEYADTFSSANLGWYARIESNWQDDSNVGSTTNNNPQDIQEAFALTNIRLGLLGS HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECC NEDWSVQLYAENVTNESYCQNTFNQPFGDQFGTVSNGGTLIRCVMGTPRTFGLRASYHFE CCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA