| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962661
Identifier: 157962661
GI number: 157962661
Start: 3466161
End: 3467645
Strand: Reverse
Name: 157962661
Synonym: Spea_2842
Alternate gene names: NA
Gene position: 3467645-3466161 (Counterclockwise)
Preceding gene: 157962662
Following gene: 157962660
Centisome position: 67.01
GC content: 42.9
Gene sequence:
>1485_bases ATGAAAAAAGCACTTCTTAGCATTGTAGTTTTCCTTATCTGCGTAACGCTCACTCTCTTTCTATCTCGTGGAGCAATAAA GGACTATCTTTCATACCGCTTTATTGGCCCAGCCAGTTATTTTGACTTGGATGAAATCAAGGACCAATCCACGTTAGATG TGGAGATCAAGCAAGATAAAATAGTTGATAGTCAGTCACGTCCCGGCGAGAAGGTCAGAGTCATTAAGCTCTCTTTTACC AGTCAGAAATGGCACGGCTCTACTTGGAGGCACCCTGCAACTATCTATGTTCCTGCTAATTACCAAGGTGAGGGGAATGT CGGCATCATTGCCACCAATCGTGCTTTCAAAGGTCAACATGAAACAGAGAGTACAACAGGGGGTCATCAAAATCAGGTTG TAGAATCTAATGTCGTGCCTGAACACTTGCGTCACCTTTTTGAACGTCAAAAAATACCGGGTACCGAATTAAATACTGAG GCCGAATACGCTGAAGTAACCGCGATAGACTTGAATACACCGATCATGATATTTCCAAACCCTGCCACGTTAATTTTTGA TAAGGACGAAAGTAATTTGATGGGTTATGGCTTACAAATGGCGATAGACACATTTGATTTGAGCTGGATTGGTTATGTGC CTATTGCCACAAGTTATTTAAAAGCAATTACCTTGCTTGAGTCGATTGAAGGGATAGCAGCAAAAAAGGCCGTCATTATG GGCTGCTCTAAACGTGGTTTTGCCTCGTCAATCGCCTTAGGGGCTGGTGATGATCGCTTAGCCGGTGTTATGGCAACCTG TTATTACGGCGGTAATGTGCTTTACGACATTATGAGAAAGTTTGAATCGTTTGGCACTGATATTGGTGGTCCTGCTGTTG AAAGAGACGGGCCGGCATTTCAACCAGCTGATAAGCTCTTAGCAAAAATGAATGGACCTGCGGGGAACTTGGCTACCATG GCTTTTGACCCTTATCTCTGGAAGAAAAAGATTAACACACCTTATTTTGTCGCTCTGGGTACCAATGACGAGTTCTTTGG ACTAGGTGCACCCAACGGTATGATGAGTGAGCTTAAAGGCGACAAAGCGTTTTTATATGTAGATAACCTACGTCATTCAT GGGTTTCAAAGAAACACTTACATTCATGGCGCACTTGGCTAGCTCATGTATTTTATGACCGCAAACTGCCTACAGTCGAA GTTGAATCACAAGTCGAAGGGTCGAAAGTCAATGTGATTGCAGATGTTGCATCTTCAAATACCTTGAAGCATGTCCGCTT GTACTACTCCGTTAACCGCTCATTAGACTGGCGCGAAGCTAAATGGGAATTTAAAGCCATGAAAATGGTCAATGGTAAAT TTCAGTCACAGCTTGAAAAAATTGACGGTAAAAACCTAGCTTACTATGTTGAGGTTGAAGACTTCCATGATAAAGGTGGT ATCGGCTACTCAAGTTCTTTGGTAGAGATAAACCGAGCGAACTAA
Upstream 100 bases:
>100_bases AGCAAAACTAAACCCGCTGTTAAAGTCGACTCAGACACTTTATTGAGATTAACTAATCACATGACGACTATTTCGTATCA ACTAAAAAAAGAGCCATAGA
Downstream 100 bases:
>100_bases TAGATAAATCCAGGTTTAATTTCAAACCTGAATGATATTGCGGGCCTAGCAGGCTAAAGTCCATGCCCGTTGTATCCCTG CCTGATATTTCGAACCATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MKKALLSIVVFLICVTLTLFLSRGAIKDYLSYRFIGPASYFDLDEIKDQSTLDVEIKQDKIVDSQSRPGEKVRVIKLSFT SQKWHGSTWRHPATIYVPANYQGEGNVGIIATNRAFKGQHETESTTGGHQNQVVESNVVPEHLRHLFERQKIPGTELNTE AEYAEVTAIDLNTPIMIFPNPATLIFDKDESNLMGYGLQMAIDTFDLSWIGYVPIATSYLKAITLLESIEGIAAKKAVIM GCSKRGFASSIALGAGDDRLAGVMATCYYGGNVLYDIMRKFESFGTDIGGPAVERDGPAFQPADKLLAKMNGPAGNLATM AFDPYLWKKKINTPYFVALGTNDEFFGLGAPNGMMSELKGDKAFLYVDNLRHSWVSKKHLHSWRTWLAHVFYDRKLPTVE VESQVEGSKVNVIADVASSNTLKHVRLYYSVNRSLDWREAKWEFKAMKMVNGKFQSQLEKIDGKNLAYYVEVEDFHDKGG IGYSSSLVEINRAN
Sequences:
>Translated_494_residues MKKALLSIVVFLICVTLTLFLSRGAIKDYLSYRFIGPASYFDLDEIKDQSTLDVEIKQDKIVDSQSRPGEKVRVIKLSFT SQKWHGSTWRHPATIYVPANYQGEGNVGIIATNRAFKGQHETESTTGGHQNQVVESNVVPEHLRHLFERQKIPGTELNTE AEYAEVTAIDLNTPIMIFPNPATLIFDKDESNLMGYGLQMAIDTFDLSWIGYVPIATSYLKAITLLESIEGIAAKKAVIM GCSKRGFASSIALGAGDDRLAGVMATCYYGGNVLYDIMRKFESFGTDIGGPAVERDGPAFQPADKLLAKMNGPAGNLATM AFDPYLWKKKINTPYFVALGTNDEFFGLGAPNGMMSELKGDKAFLYVDNLRHSWVSKKHLHSWRTWLAHVFYDRKLPTVE VESQVEGSKVNVIADVASSNTLKHVRLYYSVNRSLDWREAKWEFKAMKMVNGKFQSQLEKIDGKNLAYYVEVEDFHDKGG IGYSSSLVEINRAN >Mature_494_residues MKKALLSIVVFLICVTLTLFLSRGAIKDYLSYRFIGPASYFDLDEIKDQSTLDVEIKQDKIVDSQSRPGEKVRVIKLSFT SQKWHGSTWRHPATIYVPANYQGEGNVGIIATNRAFKGQHETESTTGGHQNQVVESNVVPEHLRHLFERQKIPGTELNTE AEYAEVTAIDLNTPIMIFPNPATLIFDKDESNLMGYGLQMAIDTFDLSWIGYVPIATSYLKAITLLESIEGIAAKKAVIM GCSKRGFASSIALGAGDDRLAGVMATCYYGGNVLYDIMRKFESFGTDIGGPAVERDGPAFQPADKLLAKMNGPAGNLATM AFDPYLWKKKINTPYFVALGTNDEFFGLGAPNGMMSELKGDKAFLYVDNLRHSWVSKKHLHSWRTWLAHVFYDRKLPTVE VESQVEGSKVNVIADVASSNTLKHVRLYYSVNRSLDWREAKWEFKAMKMVNGKFQSQLEKIDGKNLAYYVEVEDFHDKGG IGYSSSLVEINRAN
Specific function: Unknown
COG id: COG4287
COG function: function code R; PhoPQ-activated pathogenicity-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55199; Mature: 55199
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKALLSIVVFLICVTLTLFLSRGAIKDYLSYRFIGPASYFDLDEIKDQSTLDVEIKQDK CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCCCCCHHHHCCCCEEEEEEECCC IVDSQSRPGEKVRVIKLSFTSQKWHGSTWRHPATIYVPANYQGEGNVGIIATNRAFKGQH CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCC ETESTTGGHQNQVVESNVVPEHLRHLFERQKIPGTELNTEAEYAEVTAIDLNTPIMIFPN CCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECC PATLIFDKDESNLMGYGLQMAIDTFDLSWIGYVPIATSYLKAITLLESIEGIAAKKAVIM CEEEEEECCCCCCCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEE GCSKRGFASSIALGAGDDRLAGVMATCYYGGNVLYDIMRKFESFGTDIGGPAVERDGPAF ECCCCCCCCEEEECCCCCHHHHHHHEEHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC QPADKLLAKMNGPAGNLATMAFDPYLWKKKINTPYFVALGTNDEFFGLGAPNGMMSELKG CCHHHHHHHCCCCCCCEEEEEECCHHHHHCCCCCEEEEECCCCCEEECCCCCCHHHHCCC DKAFLYVDNLRHSWVSKKHLHSWRTWLAHVFYDRKLPTVEVESQVEGSKVNVIADVASSN CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCC TLKHVRLYYSVNRSLDWREAKWEFKAMKMVNGKFQSQLEKIDGKNLAYYVEVEDFHDKGG CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC IGYSSSLVEINRAN CCCCCCEEEEECCC >Mature Secondary Structure MKKALLSIVVFLICVTLTLFLSRGAIKDYLSYRFIGPASYFDLDEIKDQSTLDVEIKQDK CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCCCCCHHHHCCCCEEEEEEECCC IVDSQSRPGEKVRVIKLSFTSQKWHGSTWRHPATIYVPANYQGEGNVGIIATNRAFKGQH CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCC ETESTTGGHQNQVVESNVVPEHLRHLFERQKIPGTELNTEAEYAEVTAIDLNTPIMIFPN CCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECC PATLIFDKDESNLMGYGLQMAIDTFDLSWIGYVPIATSYLKAITLLESIEGIAAKKAVIM CEEEEEECCCCCCCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEE GCSKRGFASSIALGAGDDRLAGVMATCYYGGNVLYDIMRKFESFGTDIGGPAVERDGPAF ECCCCCCCCEEEECCCCCHHHHHHHEEHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC QPADKLLAKMNGPAGNLATMAFDPYLWKKKINTPYFVALGTNDEFFGLGAPNGMMSELKG CCHHHHHHHCCCCCCCEEEEEECCHHHHHCCCCCEEEEECCCCCEEECCCCCCHHHHCCC DKAFLYVDNLRHSWVSKKHLHSWRTWLAHVFYDRKLPTVEVESQVEGSKVNVIADVASSN CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCC TLKHVRLYYSVNRSLDWREAKWEFKAMKMVNGKFQSQLEKIDGKNLAYYVEVEDFHDKGG CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC IGYSSSLVEINRAN CCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA