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The map label for this gene is ompW [H]

Identifier: 157962608

GI number: 157962608

Start: 3404570

End: 3405217

Strand: Reverse

Name: ompW [H]

Synonym: Spea_2787

Alternate gene names: 157962608

Gene position: 3405217-3404570 (Counterclockwise)

Preceding gene: 157962609

Following gene: 157962606

Centisome position: 65.81

GC content: 44.14

Gene sequence:

>648_bases
ATGATGAATAATAAAATCCTTTCTAGCTTGATCGCCACCGCCCTACTAACGACAGGTTTTACCTCTTCAGCATTAGCTCA
CCAAGCTGGCGACATTATTGTCCGTGCAGGTGTAGCAGTAGTTGCCCCGAATGAATCTAGCCCAGTTGTTGCCAATATTG
CCGAGTTTGGAGTGAGTGATAATACTCAGCTAGGTTTGAACTTCGGCTATATGTTGACTGACAACATAGGTATTGAGTTG
TTAGCCGCTACGCCATTTACTCACGATATCTCATTAGGTGAGCATGGAAAGATTGCCGAGACTAAGCAGCTACCACCAAC
CCTTGTGGCTCAGTATTATTTTGGCGATGCGAACTCTAAGTTACGTCCATATATCGGCGCAGGTGTTAACTTTACTAATT
TCTTCGATAACGAATTTACCAACGACTTAGGTGGCGCGTTAACTGATTTAAGCATGTCCAACTCATGGGGCTTAGCGGCT
CAGGTAGGTCTTGATTATCAAATCAATGATAGCTGGCTAATAAATGCGTCAGTTTGGTATGCACAGATCAGTACCGACGT
TAAGTTCAACTTAGGCGGTGCACCACAAAAAGTCGAAACAGATATCGACCCATGGGTTTACATGGTGAGCGTAGGTTACA
CCTTCTAA

Upstream 100 bases:

>100_bases
TTTAGATCAAATCTCACTCGATGTTGATCTGGCAGGATGCACGCAAATGTAAGGAATTTGATAATAAAAGCAGCGCTATA
TGTTGTATTAATGGAGTAGT

Downstream 100 bases:

>100_bases
TCTGAAGACATTCTGGACAAGTCCCACCCATAAAAAAGGAGCCAATAGGCTCCTTTTTTATGTTTCATACACAATTGCTG
TGATTACTTCGATTCTTTCT

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MMNNKILSSLIATALLTTGFTSSALAHQAGDIIVRAGVAVVAPNESSPVVANIAEFGVSDNTQLGLNFGYMLTDNIGIEL
LAATPFTHDISLGEHGKIAETKQLPPTLVAQYYFGDANSKLRPYIGAGVNFTNFFDNEFTNDLGGALTDLSMSNSWGLAA
QVGLDYQINDSWLINASVWYAQISTDVKFNLGGAPQKVETDIDPWVYMVSVGYTF

Sequences:

>Translated_215_residues
MMNNKILSSLIATALLTTGFTSSALAHQAGDIIVRAGVAVVAPNESSPVVANIAEFGVSDNTQLGLNFGYMLTDNIGIEL
LAATPFTHDISLGEHGKIAETKQLPPTLVAQYYFGDANSKLRPYIGAGVNFTNFFDNEFTNDLGGALTDLSMSNSWGLAA
QVGLDYQINDSWLINASVWYAQISTDVKFNLGGAPQKVETDIDPWVYMVSVGYTF
>Mature_215_residues
MMNNKILSSLIATALLTTGFTSSALAHQAGDIIVRAGVAVVAPNESSPVVANIAEFGVSDNTQLGLNFGYMLTDNIGIEL
LAATPFTHDISLGEHGKIAETKQLPPTLVAQYYFGDANSKLRPYIGAGVNFTNFFDNEFTNDLGGALTDLSMSNSWGLAA
QVGLDYQINDSWLINASVWYAQISTDVKFNLGGAPQKVETDIDPWVYMVSVGYTF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=208, Percent_Identity=54.3269230769231, Blast_Score=228, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23069; Mature: 23069

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNKILSSLIATALLTTGFTSSALAHQAGDIIVRAGVAVVAPNESSPVVANIAEFGVSD
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCEEEECCCCCCCEEEEHHHHCCCC
NTQLGLNFGYMLTDNIGIELLAATPFTHDISLGEHGKIAETKQLPPTLVAQYYFGDANSK
CCEEEEEEEEEEECCCCEEEEEECCCEEECCCCCCCCCCCCCCCCHHHEEEEEECCCCCC
LRPYIGAGVNFTNFFDNEFTNDLGGALTDLSMSNSWGLAAQVGLDYQINDSWLINASVWY
CCEEEECCCCCCCCCCCHHHHHHCCCEEECCCCCCCCEEEEECCCEEECCCEEEEEEEEE
AQISTDVKFNLGGAPQKVETDIDPWVYMVSVGYTF
EEEECCEEEECCCCCCEECCCCCCEEEEEEECCCC
>Mature Secondary Structure
MMNNKILSSLIATALLTTGFTSSALAHQAGDIIVRAGVAVVAPNESSPVVANIAEFGVSD
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCEEEECCCCCCCEEEEHHHHCCCC
NTQLGLNFGYMLTDNIGIELLAATPFTHDISLGEHGKIAETKQLPPTLVAQYYFGDANSK
CCEEEEEEEEEEECCCCEEEEEECCCEEECCCCCCCCCCCCCCCCHHHEEEEEECCCCCC
LRPYIGAGVNFTNFFDNEFTNDLGGALTDLSMSNSWGLAAQVGLDYQINDSWLINASVWY
CCEEEECCCCCCCCCCCHHHHHHCCCEEECCCCCCCCEEEEECCCEEECCCEEEEEEEEE
AQISTDVKFNLGGAPQKVETDIDPWVYMVSVGYTF
EEEECCEEEECCCCCCEECCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]