Click here to switch to the map view.

The map label for this gene is rhaS [C]

Identifier: 157962538

GI number: 157962538

Start: 3322370

End: 3323242

Strand: Reverse

Name: rhaS [C]

Synonym: Spea_2717

Alternate gene names: 157962538

Gene position: 3323242-3322370 (Counterclockwise)

Preceding gene: 157962540

Following gene: 157962537

Centisome position: 64.22

GC content: 38.26

Gene sequence:

>873_bases
ATGAAGAGTGTTCCTAATGTAGAATTTAGAGCCCCGAGTATTAAAAAGTCGGGTGTCGAAATATTAGATTTGGAGCTTTT
TTATAGCAGATTACCTAAGTATAAAGTTTGTCCATCACATGCTCACCGGATCAATTATTTCTGTTTTATTTATATTACAG
AGGGTGAAGGTGGGCATTTTGTCGATTTTAAATATCATCCATTTAAAAAGGGGAGCTTTATTTTTGTCAATAAACATCAA
GTGCACGCTTTTGATCTGAAGAGTCGCGCAAAAGGTAAAATGATCAATATTACCGAAGACTTCTTAAATAAAATTTTAGC
CAATATTAGAATTCCTTTTTTCACGCCAACTCATCTGGTTAGTTCTCAACAGCCGCTGTTAGCACTAAGTTCATCGCTGA
TTAAAACGTGTGATAACCTGCTGTTGGAGATCAATAAAGCTCAGGAGAGCGAAACGGATTGTCAGCTATTGGTTCAGCTG
TTATTTTCGTCGCTTTTGGTAGCTTTAGCTGCTGAACGGAAAACCGACGTACAGCATCTAAGTGAAGCTCAAGCATTACG
TTTTCAGCAGTTTTTATTACTAATTGAAAGTCATGCTGCCCATACCCGAGATGCTTCAGGCTATGGGGATATGCTGCATA
TCTCTTATAAATCACTAAATCAACTTTGCAAGCAAGCCAGCGGCCAAACCGCTAAGCAGTTAATTGATGCTCACGCCATT
CTTGAAATAAAACGAAGATTAACTATCGGTAGCGCCAAAATTCAAGAGATTGCTTATGAATTGGGTTTCGATGATGTGAC
CTATTTCGTTAAGTTTTTTAAGCGTCATACCCAACTTACGCCTTCTCAATTCAGAGCGAAGTCTGTTAACTAG

Upstream 100 bases:

>100_bases
TGGATTCATTATTAGATAGTCCGCTAAAGTAGTTGTTGATGTTTAATCTTAAGCACGCAATGTATCAATTTTGGATTTTT
TAACGGTAAGTGTAACGTCG

Downstream 100 bases:

>100_bases
TTATCTTAAATTTAATCTTTCAATCACTTGATTAGAATGAAAAGTAAACTTTAAATCTCTAAGAGAAAATACCTGCCAAG
CTCACATAGTTTCTACTCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; AraC Family Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; AraC/XylS Family Transcription Factor; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKSVPNVEFRAPSIKKSGVEILDLELFYSRLPKYKVCPSHAHRINYFCFIYITEGEGGHFVDFKYHPFKKGSFIFVNKHQ
VHAFDLKSRAKGKMINITEDFLNKILANIRIPFFTPTHLVSSQQPLLALSSSLIKTCDNLLLEINKAQESETDCQLLVQL
LFSSLLVALAAERKTDVQHLSEAQALRFQQFLLLIESHAAHTRDASGYGDMLHISYKSLNQLCKQASGQTAKQLIDAHAI
LEIKRRLTIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFRAKSVN

Sequences:

>Translated_290_residues
MKSVPNVEFRAPSIKKSGVEILDLELFYSRLPKYKVCPSHAHRINYFCFIYITEGEGGHFVDFKYHPFKKGSFIFVNKHQ
VHAFDLKSRAKGKMINITEDFLNKILANIRIPFFTPTHLVSSQQPLLALSSSLIKTCDNLLLEINKAQESETDCQLLVQL
LFSSLLVALAAERKTDVQHLSEAQALRFQQFLLLIESHAAHTRDASGYGDMLHISYKSLNQLCKQASGQTAKQLIDAHAI
LEIKRRLTIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFRAKSVN
>Mature_290_residues
MKSVPNVEFRAPSIKKSGVEILDLELFYSRLPKYKVCPSHAHRINYFCFIYITEGEGGHFVDFKYHPFKKGSFIFVNKHQ
VHAFDLKSRAKGKMINITEDFLNKILANIRIPFFTPTHLVSSQQPLLALSSSLIKTCDNLLLEINKAQESETDCQLLVQL
LFSSLLVALAAERKTDVQHLSEAQALRFQQFLLLIESHAAHTRDASGYGDMLHISYKSLNQLCKQASGQTAKQLIDAHAI
LEIKRRLTIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFRAKSVN

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33052; Mature: 33052

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVPNVEFRAPSIKKSGVEILDLELFYSRLPKYKVCPSHAHRINYFCFIYITEGEGGHF
CCCCCCCEEECCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCEE
VDFKYHPFKKGSFIFVNKHQVHAFDLKSRAKGKMINITEDFLNKILANIRIPFFTPTHLV
EEEEECCCCCCCEEEEECCEEEEECCHHCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
SSQQPLLALSSSLIKTCDNLLLEINKAQESETDCQLLVQLLFSSLLVALAAERKTDVQHL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEAQALRFQQFLLLIESHAAHTRDASGYGDMLHISYKSLNQLCKQASGQTAKQLIDAHAI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHH
LEIKRRLTIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFRAKSVN
HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
>Mature Secondary Structure
MKSVPNVEFRAPSIKKSGVEILDLELFYSRLPKYKVCPSHAHRINYFCFIYITEGEGGHF
CCCCCCCEEECCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCEE
VDFKYHPFKKGSFIFVNKHQVHAFDLKSRAKGKMINITEDFLNKILANIRIPFFTPTHLV
EEEEECCCCCCCEEEEECCEEEEECCHHCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
SSQQPLLALSSSLIKTCDNLLLEINKAQESETDCQLLVQLLFSSLLVALAAERKTDVQHL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEAQALRFQQFLLLIESHAAHTRDASGYGDMLHISYKSLNQLCKQASGQTAKQLIDAHAI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHH
LEIKRRLTIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFRAKSVN
HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA