Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 157962144

GI number: 157962144

Start: 2829873

End: 2830535

Strand: Reverse

Name: ydhC [H]

Synonym: Spea_2323

Alternate gene names: 157962144

Gene position: 2830535-2829873 (Counterclockwise)

Preceding gene: 157962146

Following gene: 157962143

Centisome position: 54.7

GC content: 46.3

Gene sequence:

>663_bases
ATGACTTTTTTTAACGAACAGCCTGTTACCAGTGCCGATAAGACCTTTTTCCAGCTACGTAAAGCTATCGTAGAGGGCGA
GGTTTTGCAGGGCTCAAAGTTAAGTGAAACTGAGTTGTCGACAAAATATGCCGTTAGTCGAGCGGTGATCCGTGAGGCGA
TTAATCGTTTAGAGGCTAGTCACTTAGTTGAGCGTAAAGCCAATGTTGGCGCAAGGGTGGTGAGCCTTACCGCCGAAGGG
CTCGTTGAGCTTTATCAGGTGAGAGAGTCTCTGGAGGGCATGGCGGCAAGGCTTGCCGCAATAAATATGACCGATCAAGA
GATCACTGATCTACAAGCCTTGCTCAACAGTCACTTTGAAAAGGTCCAATCGGCAGGCTCTTATTACCAGGAAGCAGGTG
ATGTGGACTTTCACTATCGCATCATTCAAGGCAGTAAAAACAAACACCTTATCTCTATGCTGTTTGACGGCATATATCAC
CTAGTGCGTATGTACCGCGTACAGCTAGGGATGACGGGGCCACGAGTGACTACCGCCTTCGATGAGCATAAACACATAGT
ACAAGCGATTTGTAATCGTGATGCAGAACTCGCAGAGATGCTGATGCGTCGCCATATTTTGTACTCAAAATCTAGTATTC
AAAACAAGCTAGCTAATGATTAA

Upstream 100 bases:

>100_bases
CTCTTACTTTGTCGACAATTTGTCGGTGCATTGTTGACTATTTGTATTTAAATGGCTAGATTGTCGACAATCCATTAAAA
ACTAATATTGTATTTAACTG

Downstream 100 bases:

>100_bases
GCAACACCATAAAAAATCAACAACTGACAGTAATAACCTTATAAATTTTGCAGTGCTTGAGCTAAGCCCTAGTACAGAGC
TAAGTACAGAGCTAAGTACA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTFFNEQPVTSADKTFFQLRKAIVEGEVLQGSKLSETELSTKYAVSRAVIREAINRLEASHLVERKANVGARVVSLTAEG
LVELYQVRESLEGMAARLAAINMTDQEITDLQALLNSHFEKVQSAGSYYQEAGDVDFHYRIIQGSKNKHLISMLFDGIYH
LVRMYRVQLGMTGPRVTTAFDEHKHIVQAICNRDAELAEMLMRRHILYSKSSIQNKLAND

Sequences:

>Translated_220_residues
MTFFNEQPVTSADKTFFQLRKAIVEGEVLQGSKLSETELSTKYAVSRAVIREAINRLEASHLVERKANVGARVVSLTAEG
LVELYQVRESLEGMAARLAAINMTDQEITDLQALLNSHFEKVQSAGSYYQEAGDVDFHYRIIQGSKNKHLISMLFDGIYH
LVRMYRVQLGMTGPRVTTAFDEHKHIVQAICNRDAELAEMLMRRHILYSKSSIQNKLAND
>Mature_219_residues
TFFNEQPVTSADKTFFQLRKAIVEGEVLQGSKLSETELSTKYAVSRAVIREAINRLEASHLVERKANVGARVVSLTAEGL
VELYQVRESLEGMAARLAAINMTDQEITDLQALLNSHFEKVQSAGSYYQEAGDVDFHYRIIQGSKNKHLISMLFDGIYHL
VRMYRVQLGMTGPRVTTAFDEHKHIVQAICNRDAELAEMLMRRHILYSKSSIQNKLAND

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=223, Percent_Identity=26.9058295964126, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082208, Length=220, Percent_Identity=25.9090909090909, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24894; Mature: 24763

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFFNEQPVTSADKTFFQLRKAIVEGEVLQGSKLSETELSTKYAVSRAVIREAINRLEAS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLVERKANVGARVVSLTAEGLVELYQVRESLEGMAARLAAINMTDQEITDLQALLNSHFE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KVQSAGSYYQEAGDVDFHYRIIQGSKNKHLISMLFDGIYHLVRMYRVQLGMTGPRVTTAF
HHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DEHKHIVQAICNRDAELAEMLMRRHILYSKSSIQNKLAND
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFFNEQPVTSADKTFFQLRKAIVEGEVLQGSKLSETELSTKYAVSRAVIREAINRLEAS
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLVERKANVGARVVSLTAEGLVELYQVRESLEGMAARLAAINMTDQEITDLQALLNSHFE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KVQSAGSYYQEAGDVDFHYRIIQGSKNKHLISMLFDGIYHLVRMYRVQLGMTGPRVTTAF
HHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DEHKHIVQAICNRDAELAEMLMRRHILYSKSSIQNKLAND
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]