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The map label for this gene is hofB [C]

Identifier: 157961840

GI number: 157961840

Start: 2444505

End: 2445833

Strand: Direct

Name: hofB [C]

Synonym: Spea_2019

Alternate gene names: 157961840

Gene position: 2444505-2445833 (Clockwise)

Preceding gene: 157961839

Following gene: 157961841

Centisome position: 47.24

GC content: 42.36

Gene sequence:

>1329_bases
ATGGAAATTAGGCAAGAAAGTAATCGAATTCAAGATTTCCAGCCATTAACTCAAGATGAGCAGGATATTAAGGTTGCCCT
ATACGATAAGTTATTGAGCGTAATGGATCTATCTCTTATTGAGACTGTCTCGAAGGAGCAAGCTCGAATTCAGATTAGTG
AAATATGTGAGCAAATTTTAAATGGGTTGAATCTACCAATTAATCTCTCCACACGAAAGCGTCTAGTAGGCCTGATTATT
GATGAAGTACTGGGACTTGGCCCCCTTGAAACCCTTCTGGCCGACCCGTCAATATCAGATATTCTGGTAAACTCCTACGA
CAGGGTATATGTAGAGCGAAAAGGTAAGCTAGAAGCCGTTAATATCAAATTCCACAGTAATTCACATCTTTTAAACATCA
TTGATAGGATTGTGTCTAGCGTAGGTCGACGAATTGATGAGTCGTCGCCTATGGTTGACGCAAGGCTCGCTGATGGTTCG
CGTGTAAATGCAATTATCCCCCCTCTAGCTCTTGATGGACCCTCACTTTCAATTCGTCGATTCGCTGTAGATAAGCTAAA
TGCTGGGCAGCTTATTGAAATTGGTTCTGTAACAGAGGCGATGATTGAACTTCTTAAAGGGGGAGTAAAGGGTAAGTTAA
ATATTCTTGTCTCGGGTGGTACGGGTAGTGGTAAAACAACGTTACTGAATATGCTCTCAGGCTTTATTCCAAGTGATGAA
CGCATCGTTACTATTGAGGACTCCGCCGAACTACAATTACAGCAACCCCATACGGTAAGGCTAGAAACTCGTCCTCAGAA
TATTGAAGGGAAAGGAGAAGTTTCACAGAGAGATCTAGTGAAGAACTGCTTGAGAATGAGACCCGACCGAATAGTGATAG
GTGAGGTTCGTGGTGGTGAAGCATTAGACATGCTTACGGCAATGAACACGGGTCATGAAGGGTCGTTAACAACCTTACAT
GCTAACAGCCCTAGAGATGCTCTTGGTCGACTCGAATATATGGTTTGTATGGCAGGTTTTGATATGCCAGTAAGCAATAT
TCGAACGCAGGTAGCTTCAGCAATCGATATGGTTGTTCAGCTAGAACGTCAGGAGGACGGTCGCAGAAGACTCACGAGTA
TACAAGAAATTAATGGCATGGAAGGGGATATTATTACCATGTCAGAAATCTTTCGTTTTACGAGAAAGGGTTTAGATGAA
GAAGGAATGATTATTGGAGAATTTGAGGCGACAGGTGTCATCCCAAGCTTCCATGCAAAACTTAAGCAACATGGTATTGA
GCTTCCATACCATCTTTTCAATTGTGGTGATCCATTTGCAGAATTTTAG

Upstream 100 bases:

>100_bases
GTTACCGATGTACGCTCTTTAGCGGATAGGTTTTTACCGATTAATAATGAACAAAATAAAAAAAGTACAAGTTTTTGGAA
GCGACTTTTAGGAAACTAAT

Downstream 100 bases:

>100_bases
GGAGCTAATGTATGTTTTCTAATCAAGTTATTTTCCTCGGCCTCGTTTTTATCGCGGTACTTTTCTTGTCACAGGCTCTT
TTTTTACCTGTATATAGCCC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MEIRQESNRIQDFQPLTQDEQDIKVALYDKLLSVMDLSLIETVSKEQARIQISEICEQILNGLNLPINLSTRKRLVGLII
DEVLGLGPLETLLADPSISDILVNSYDRVYVERKGKLEAVNIKFHSNSHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQVASAIDMVVQLERQEDGRRRLTSIQEINGMEGDIITMSEIFRFTRKGLDE
EGMIIGEFEATGVIPSFHAKLKQHGIELPYHLFNCGDPFAEF

Sequences:

>Translated_442_residues
MEIRQESNRIQDFQPLTQDEQDIKVALYDKLLSVMDLSLIETVSKEQARIQISEICEQILNGLNLPINLSTRKRLVGLII
DEVLGLGPLETLLADPSISDILVNSYDRVYVERKGKLEAVNIKFHSNSHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQVASAIDMVVQLERQEDGRRRLTSIQEINGMEGDIITMSEIFRFTRKGLDE
EGMIIGEFEATGVIPSFHAKLKQHGIELPYHLFNCGDPFAEF
>Mature_442_residues
MEIRQESNRIQDFQPLTQDEQDIKVALYDKLLSVMDLSLIETVSKEQARIQISEICEQILNGLNLPINLSTRKRLVGLII
DEVLGLGPLETLLADPSISDILVNSYDRVYVERKGKLEAVNIKFHSNSHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQVASAIDMVVQLERQEDGRRRLTSIQEINGMEGDIITMSEIFRFTRKGLDE
EGMIIGEFEATGVIPSFHAKLKQHGIELPYHLFNCGDPFAEF

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48933; Mature: 48933

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRQESNRIQDFQPLTQDEQDIKVALYDKLLSVMDLSLIETVSKEQARIQISEICEQIL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH
NGLNLPINLSTRKRLVGLIIDEVLGLGPLETLLADPSISDILVNSYDRVYVERKGKLEAV
CCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEE
NIKFHSNSHLLNIIDRIVSSVGRRIDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEEE
FAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
EECCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGE
EEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
ALDMLTAMNTGHEGSLTTLHANSPRDALGRLEYMVCMAGFDMPVSNIRTQVASAIDMVVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERQEDGRRRLTSIQEINGMEGDIITMSEIFRFTRKGLDEEGMIIGEFEATGVIPSFHAK
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
LKQHGIELPYHLFNCGDPFAEF
HHHCCCCCCCCEECCCCHHCCC
>Mature Secondary Structure
MEIRQESNRIQDFQPLTQDEQDIKVALYDKLLSVMDLSLIETVSKEQARIQISEICEQIL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH
NGLNLPINLSTRKRLVGLIIDEVLGLGPLETLLADPSISDILVNSYDRVYVERKGKLEAV
CCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEE
NIKFHSNSHLLNIIDRIVSSVGRRIDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEEE
FAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
EECCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGE
EEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
ALDMLTAMNTGHEGSLTTLHANSPRDALGRLEYMVCMAGFDMPVSNIRTQVASAIDMVVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERQEDGRRRLTSIQEINGMEGDIITMSEIFRFTRKGLDEEGMIIGEFEATGVIPSFHAK
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
LKQHGIELPYHLFNCGDPFAEF
HHHCCCCCCCCEECCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]