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The map label for this gene is hofQ [C]

Identifier: 157961834

GI number: 157961834

Start: 2439095

End: 2440531

Strand: Direct

Name: hofQ [C]

Synonym: Spea_2013

Alternate gene names: 157961834

Gene position: 2439095-2440531 (Clockwise)

Preceding gene: 157961833

Following gene: 157961835

Centisome position: 47.14

GC content: 40.78

Gene sequence:

>1437_bases
ATGTCATTCCTTCGCCACTGTTCAATTGTTTGTTTATTGGCATTATTACAGCTATCAACCGCTTATGCAGGAGGACCAAC
GGCAGGAGCTAGAAATGATGTCCAATTGATCCCGATTTTTAAATCAAGAGTATTAATGCTGAAGGGACCTGTACATAGAG
TGTCAGTAGGTAATCCAAGTATTGCCGATATAAAACTTCTTCCAAATGACGAGCTTTATATTTTGGGTAAACAGCTAGGC
AGCACAAATGTCATGATATGGGATAAAAATGAGCAACTAGCAAGAATAATGGATATTGAGGTGACCCATGATTTAAATGG
TTTAAAGACTAGGTTATATCAGTTCCTTCCTACTGAGAAATTAGGTGTGCAGACTTCTCAAGGACAATTGCTATTAAGCG
GGCAAGCATCAAACTTACAAAAAATGAATACTGCGGTGGAGTTAGCCCAAGGTTATGCCGAAGCGGCAGCTGGAGGACAA
GCTCCGAGTAAAGTGCTTAATATGATGACCATTGGAGGCGACCATCAAGTCATGTTGGAAGTGGTCGTTGCAGAGGTACA
AAGAAATGTAGCGAGGCAATTTGACTCCAAGTTCTTTATCTTCAATCAAGGCTCAAATTTATCTGGTGGTCTTGTTGGAG
GAGGTGGAGGTTTTGATCCTGGCAGCATTGGTGGAATAGATGCTAAGGGCTTATTTGCACAATATATTAACGGCGATTTA
ATGATGAATTTTGCGCTCGATATCGCTAAACAGAACGGATTAGCAAAAGTATTAGCTGAGCCGAATGTTACGGCTATGAG
CGGCCAGTCTGCAGAGTTTCTCTCTGGTGGCGAATTTCCTATTCCAGTCCCTGGTGAAAATGGCAATACAACCATTGAAT
ACAGAGACTATGGTGTCGGTGTTAAATTTGTACCGACAGTTCTCGACTCTGGTCAGATAAATTTAAACTTAAATGTAGTG
GTCAGTGAAATTAGCACAGCAAATGGCTTTGCCATTTCAGGCAATACATCTACTACATTAGTTGTACCATCACTCGTAAA
ACGGAGCACAGCAACGACTGTCGAGTTGGCTGATGGTCAAACGATTGCTATCAGTGGTTTGATCAGTGACACATTGAGAG
AAAATATTGATAAATTACCTGGCTTAGGGGATGTCCCGGTTCTAGGACAGTTATTTACTAGCAAAAGCTTTCAAAGTGGA
CAAAGTGAGTTAGTTATTTTAGTAACACCTAGACTCGTAAGGGCTTTCAATCGAAAAGATATCTCCTTGCCCACAGATGG
TTTTGTTCTTCCATCAGATGTTGAGTTTTACTTGTTAGGTAAGCTGTCCCATAAAGAAAACTCTGATGACAGTAGTGATA
CTCCTTATGAACCTGCCGAATCAGATACGCAATTAGATGATACAGGCACTCAGCAAAAATATGGTCATTCACTTTAA

Upstream 100 bases:

>100_bases
GGTTTTGTTGCTTAAAGGCATGAGTGAGCAAGAGATAAAAATCGACAACAATTAATTTGTTAGCATCGATCAAATAGATT
CATGTTTTAAGGAGAATAAC

Downstream 100 bases:

>100_bases
ATTGAGGAGTAATACTTATGAGGGACGACAAGGCTGTTTCAGTAATCAATTATTTTGCAATATTTTTTATTATTTGCTTC
AGTTTGGGTGGTTGTACAAA

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSFLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDELYILGKQLG
STNVMIWDKNEQLARIMDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGGQ
APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIGGIDAKGLFAQYINGDL
MMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVV
VSEISTANGFAISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSG
QSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTPYEPAESDTQLDDTGTQQKYGHSL

Sequences:

>Translated_478_residues
MSFLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDELYILGKQLG
STNVMIWDKNEQLARIMDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGGQ
APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIGGIDAKGLFAQYINGDL
MMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVV
VSEISTANGFAISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSG
QSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTPYEPAESDTQLDDTGTQQKYGHSL
>Mature_477_residues
SFLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDELYILGKQLGS
TNVMIWDKNEQLARIMDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGGQA
PSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIGGIDAKGLFAQYINGDLM
MNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVV
SEISTANGFAISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQ
SELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTPYEPAESDTQLDDTGTQQKYGHSL

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=215, Percent_Identity=29.7674418604651, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082242, Length=264, Percent_Identity=26.1363636363636, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50982; Mature: 50850

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEECCCCC
IADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARIMDIEVTHDLNGLKTRLYQFLPTEK
CEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHCCCHH
LGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGGQAPSKVLNMMTIGGDHQVMLE
HCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCHHHHHH
VVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIGGIDAKGLFAQYINGDL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCE
MMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVG
EEEEHHHHHHCCCCEEEECCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCC
VKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTSTTLVVPSLVKRSTATTVELADGQ
EEEEEHHCCCCEEEEEEEEEEEEECCCCCEEEECCCCEEEEEHHHHCCCCCCEEEECCCC
TIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSELVILVTPRLVRAFNRKD
EEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCC
ISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTPYEPAESDTQLDDTGTQQKYGHSL
CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure 
SFLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPS
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEECCCCC
IADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARIMDIEVTHDLNGLKTRLYQFLPTEK
CEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHCCCHH
LGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGGQAPSKVLNMMTIGGDHQVMLE
HCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCHHHHHH
VVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIGGIDAKGLFAQYINGDL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCE
MMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVG
EEEEHHHHHHCCCCEEEECCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCC
VKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTSTTLVVPSLVKRSTATTVELADGQ
EEEEEHHCCCCEEEEEEEEEEEEECCCCCEEEECCCCEEEEEHHHHCCCCCCEEEECCCC
TIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSELVILVTPRLVRAFNRKD
EEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCC
ISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTPYEPAESDTQLDDTGTQQKYGHSL
CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]