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The map label for this gene is glcB [H]

Identifier: 157961826

GI number: 157961826

Start: 2428976

End: 2429491

Strand: Direct

Name: glcB [H]

Synonym: Spea_2005

Alternate gene names: 157961826

Gene position: 2428976-2429491 (Clockwise)

Preceding gene: 157961824

Following gene: 157961827

Centisome position: 46.94

GC content: 39.92

Gene sequence:

>516_bases
ATGGATATATCAACAACGAATACTAGTACTCAAGTAAATAACAATAACGGTCATTATATTGGTGCAGAACTTGTTGATGT
GAAACTTGTCGAGGTGGCAAGTAATGACGTAACGGCCTTAAGTGCAAAAGATTTTTTAGATGCCAAGTTTCCACTCGCTA
ATGGTTCTCATAAAAATGCCTGTAGCTATGTGATCTATTATCAGCAATTATTGGTGTTCATGGCAGATGGCAGCCAAACA
GGATTACGCCAGCCTAAGCAGTTTGTTGCGCTAAACGGTCATAAAAGTGAACCTACAGCGATTCTGTTGAAGGACAAGGG
GGGTCATGTGGAGTTAACTTTCGATAGGAGTAAGGCAAATACTAATCGAGACCTAGCCAACCTTCAGGATATACAGCTAG
AAGGGCATGAGTATTGGATCAGTTTGATTAACATCGAAAACACTGTGGTTGCATCTTCTATGCAAGATCAAGTATTTACC
GCTAAAGATGGCAGTGACTACCTACTAAAAAGTTAA

Upstream 100 bases:

>100_bases
TTACACTAGACTACAAATCAAGCAATCAGAAAACGGAATACGCATTGATTGTGATTCAAACTGATAACGAGCCAAGTTTC
AAAAGTATGAGGGTAAGGCC

Downstream 100 bases:

>100_bases
ATGATGATGCCGCTAGATAATAGCGGCATCTCCTCACTGATTGCTAGTCATCTAATGTAGTCCATAATTTATACTATTCT
TTCTTAAAAATGCATAAGTA

Product: malate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MDISTTNTSTQVNNNNGHYIGAELVDVKLVEVASNDVTALSAKDFLDAKFPLANGSHKNACSYVIYYQQLLVFMADGSQT
GLRQPKQFVALNGHKSEPTAILLKDKGGHVELTFDRSKANTNRDLANLQDIQLEGHEYWISLINIENTVVASSMQDQVFT
AKDGSDYLLKS

Sequences:

>Translated_171_residues
MDISTTNTSTQVNNNNGHYIGAELVDVKLVEVASNDVTALSAKDFLDAKFPLANGSHKNACSYVIYYQQLLVFMADGSQT
GLRQPKQFVALNGHKSEPTAILLKDKGGHVELTFDRSKANTNRDLANLQDIQLEGHEYWISLINIENTVVASSMQDQVFT
AKDGSDYLLKS
>Mature_171_residues
MDISTTNTSTQVNNNNGHYIGAELVDVKLVEVASNDVTALSAKDFLDAKFPLANGSHKNACSYVIYYQQLLVFMADGSQT
GLRQPKQFVALNGHKSEPTAILLKDKGGHVELTFDRSKANTNRDLANLQDIQLEGHEYWISLINIENTVVASSMQDQVFT
AKDGSDYLLKS

Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]

COG id: COG2225

COG function: function code C; Malate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the malate synthase family. GlcB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789348, Length=117, Percent_Identity=32.4786324786325, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011076
- InterPro:   IPR001465
- InterPro:   IPR006253 [H]

Pfam domain/function: PF01274 Malate_synthase [H]

EC number: =2.3.3.9 [H]

Molecular weight: Translated: 18825; Mature: 18825

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISTTNTSTQVNNNNGHYIGAELVDVKLVEVASNDVTALSAKDFLDAKFPLANGSHKNA
CCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCH
CSYVIYYQQLLVFMADGSQTGLRQPKQFVALNGHKSEPTAILLKDKGGHVELTFDRSKAN
HHHHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCC
TNRDLANLQDIQLEGHEYWISLINIENTVVASSMQDQVFTAKDGSDYLLKS
CCCCCCCCEEEEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCCCEECC
>Mature Secondary Structure
MDISTTNTSTQVNNNNGHYIGAELVDVKLVEVASNDVTALSAKDFLDAKFPLANGSHKNA
CCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCH
CSYVIYYQQLLVFMADGSQTGLRQPKQFVALNGHKSEPTAILLKDKGGHVELTFDRSKAN
HHHHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCC
TNRDLANLQDIQLEGHEYWISLINIENTVVASSMQDQVFTAKDGSDYLLKS
CCCCCCCCEEEEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA