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The map label for this gene is ycbB [H]

Identifier: 157961780

GI number: 157961780

Start: 2381364

End: 2382719

Strand: Direct

Name: ycbB [H]

Synonym: Spea_1957

Alternate gene names: 157961780

Gene position: 2381364-2382719 (Clockwise)

Preceding gene: 157961779

Following gene: 157961781

Centisome position: 46.02

GC content: 43.58

Gene sequence:

>1356_bases
ATGCGTTTTTGTAGTCTGATATGCTACATATGTTTGTGTTGTCTTAGTGTAGCAAGTAACGCTAATGAGCGGCTTACACG
TGCGCAAAGCATGTTAAAGCAGCAGGTATCTCTGATGGCACTCGTCCAAAGCGATGAGAAGTTTGACCAATATAAGCAAT
CGCTTACTCAACATCAGCTATCAGCAGCAGAGTTGTCGAGGATTGAGACTGATATCACCACGTTTTGGCTCCAACGACAA
ATCCCAATCCGAAGTCTAGAGTTAGCCAATCAAAAAGATCCTTTGATAAGAGCCATGGCAATCGAGCCTCAATTAGATGG
ATATCTACACCTTCAGAATCGTATTCGTCATTTACAGTGGTTAGCCGAGCAGGATTGGTGGCAGGTAATTGAGAGTGAAC
GCTTGATCCGCCCGGGAGAGAGTAATCCTATTATTCCAGATGTTGTGAGGCGTTTATGGCTTTTGGGAGATGCGAGTAGT
GCGGCAACAGGGTCGAATGAGTTGAACTTACCTATTGTAGATGCACTCAAACGTTTTCAGTTACGTCACGGACTTAAGGC
CGATGCGATAATAGGGCCTGAAACGCTGAAATGGTTAAATGTTCCCCCTGAGCAGCGAGCCTCGATTCTGGCGAAAAACT
TTATCCAACGGGCTGAGTTTATGGCGCAAAGAGATGACCGCTTTCTGGTTATAAACATACCGGCTTTTGAGATGGAGCTG
TTTGATCACGGTGAGCTGGAGCTAGCTTCTCGAGTGATAGTAGGAAAGCCTTATAGACCGACGCCTATACTCAGTAGTTC
AATTTCTAATGTGGTGATTAATCCAAGTTGGCGAGTCCCTAAAAAAATCATGTATAACGATCTACTGCCACAGGTGAGAA
AAGATGGCAATTATATCTCGCAACGTAACTTTGATGTGTTTGATCGTAATAATAATCTAGTGATGCGAACCGCTGAGCAG
TGGAGCGATTTAGCTAAGGGGCCATTTCCTTTTAGGTTTGTGCAGAGACCTGGAACCAATAATACTCTTGGGAGATATAA
GTTTTACTTTCCAAATGATTTTAGTGTCTATCTGCACGATACCTCTGATCCAAAATTGTTCCAGCGGAGTAATAGGGCTC
TATCGTCAGGCTGCATTAGAATTGAGAATGTACAAGGCTTAGCCAATTGGATGGCCGCAAATTTAGTAAAAGATAAGCAA
ACATGGGTCGATAGACACGCTGATAGAAAGCGTACTCAGTGGTTCGCTCTAAAATCGTCGCTTAATGTTCATCTAGTGTA
TTGGACTGCTTGGATCGATGGTTCTAACCAAGCACAGTATAGAGATGACATCTATCAATTGCAGGAAGGCAGTTAG

Upstream 100 bases:

>100_bases
GTTAACATATCAAAAATTTGCTTACCTAATACATCCTAACGTCATATACAAAGCATAATTGTTTGCCATACTTGAAATAG
AGATATTGAGAGGGGGCAGG

Downstream 100 bases:

>100_bases
CATACGGGGAAATCAGAAATCAACGACTTATAAAGTAGTTATCACTAATTTAGCTAGATTGCTTGCTTTCTGTCATTTGA
CGGGGTAATTTGCCTGCCAG

Product: peptidoglycan-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MRFCSLICYICLCCLSVASNANERLTRAQSMLKQQVSLMALVQSDEKFDQYKQSLTQHQLSAAELSRIETDITTFWLQRQ
IPIRSLELANQKDPLIRAMAIEPQLDGYLHLQNRIRHLQWLAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASS
AATGSNELNLPIVDALKRFQLRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQRDDRFLVINIPAFEMEL
FDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYISQRNFDVFDRNNNLVMRTAEQ
WSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHDTSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQ
TWVDRHADRKRTQWFALKSSLNVHLVYWTAWIDGSNQAQYRDDIYQLQEGS

Sequences:

>Translated_451_residues
MRFCSLICYICLCCLSVASNANERLTRAQSMLKQQVSLMALVQSDEKFDQYKQSLTQHQLSAAELSRIETDITTFWLQRQ
IPIRSLELANQKDPLIRAMAIEPQLDGYLHLQNRIRHLQWLAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASS
AATGSNELNLPIVDALKRFQLRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQRDDRFLVINIPAFEMEL
FDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYISQRNFDVFDRNNNLVMRTAEQ
WSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHDTSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQ
TWVDRHADRKRTQWFALKSSLNVHLVYWTAWIDGSNQAQYRDDIYQLQEGS
>Mature_451_residues
MRFCSLICYICLCCLSVASNANERLTRAQSMLKQQVSLMALVQSDEKFDQYKQSLTQHQLSAAELSRIETDITTFWLQRQ
IPIRSLELANQKDPLIRAMAIEPQLDGYLHLQNRIRHLQWLAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASS
AATGSNELNLPIVDALKRFQLRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQRDDRFLVINIPAFEMEL
FDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYISQRNFDVFDRNNNLVMRTAEQ
WSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHDTSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQ
TWVDRHADRKRTQWFALKSSLNVHLVYWTAWIDGSNQAQYRDDIYQLQEGS

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=280, Percent_Identity=41.7857142857143, Blast_Score=217, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 52294; Mature: 52294

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCSLICYICLCCLSVASNANERLTRAQSMLKQQVSLMALVQSDEKFDQYKQSLTQHQL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SAAELSRIETDITTFWLQRQIPIRSLELANQKDPLIRAMAIEPQLDGYLHLQNRIRHLQW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASSAATGSNELNLPIVDALKRFQ
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQRDDRFLVINIPAFEMEL
HHCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEC
FDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYIS
CCCCCHHHHCCCEECCCCCCCCCHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEC
QRNFDVFDRNNNLVMRTAEQWSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHD
CCCCEEEECCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC
TSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQTWVDRHADRKRTQWFALKSS
CCCCHHHHHHCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
LNVHLVYWTAWIDGSNQAQYRDDIYQLQEGS
CEEEEEEEEEEECCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MRFCSLICYICLCCLSVASNANERLTRAQSMLKQQVSLMALVQSDEKFDQYKQSLTQHQL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SAAELSRIETDITTFWLQRQIPIRSLELANQKDPLIRAMAIEPQLDGYLHLQNRIRHLQW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASSAATGSNELNLPIVDALKRFQ
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQRDDRFLVINIPAFEMEL
HHCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEC
FDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYIS
CCCCCHHHHCCCEECCCCCCCCCHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEC
QRNFDVFDRNNNLVMRTAEQWSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHD
CCCCEEEECCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC
TSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQTWVDRHADRKRTQWFALKSS
CCCCHHHHHHCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
LNVHLVYWTAWIDGSNQAQYRDDIYQLQEGS
CEEEEEEEEEEECCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]