| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157961498
Identifier: 157961498
GI number: 157961498
Start: 2028503
End: 2030035
Strand: Reverse
Name: 157961498
Synonym: Spea_1673
Alternate gene names: NA
Gene position: 2030035-2028503 (Counterclockwise)
Preceding gene: 157961500
Following gene: 157961497
Centisome position: 39.23
GC content: 45.86
Gene sequence:
>1533_bases ATGTCAGAAACAGTGAAAAACGAACAAATGGAAGACTCGACGAAATCTTATCGCGAGCTTCACCGTCCAGCGTCTGAGTT TGAAACTCGTGAAGAGTACTTAGACAATGAGCTGAAAATCATGAAGCCTAGACGTTGGGGTCTAAACCTTCCAGGTCGTG ATTTCCGTTTTGAATGGGAAGATTTTGTCCCAGCTATTGCAGGTACTATTGGTATTACCGTTATGTACTCGGCCGTTATG GCAGCTTGGGCTGCGGGTCTTAGCGAAAGATGGGATCATATTAACCTAGGCGCAGAATTTGCGACTCAGGTTGTTCGTGT TGAAATGCTTATTCCAGCGCTACTATTCTGTATCCTCAGCTCAGGCTTTTTTAACCCAAAAGCTAACTTAGCTGGTAACC ATGGCCCGATGATCCCTCTTATCGGTGCGATTGCCTTGGCTGGCGCACATCCATTAGCTCTGGCGATCTTACTGGGCGTG TTTGGTCTCATATTAAGCTATGTAAAAGGTGGTTCTCGCTTAGTCAACCTGACCAGCAGCGGGGTTGCAGGCGGCCTATT AGTCTTCCTTGGCTTTATGGGCGCTGAAGGTCAAATTAGTTCTCTATTTGATTGGGCTAGTAACCTACAGTCTAAACATA ACCTGGATTACAGCTTAGGTTATGTAGCCTTCTTTATCTTACTTGCCAATGTGGTCTTATATGCCGTTTTAGCAAAGATT GGTAAGCGTTGGCTAGCAATTCCACTGTGTTCTATTGCTGCAGTAGCGATGGCATTCGGCTTAGGTGCAGGCCTAGATCT ACAATTTGTGACTGAGCCTGGGATTCCGAACCTAAACCCTGTGTACTGGTGGGGTTCTACGGAACATGGTTGGCAGTTAG GCTTACCTAACCTACAACATTTCATTGCTTCTCTACCTTTTGCAATCTTGGCCGTTGCTATGTGGTCTCCAGACTTCTTA GGGCACCGTATTTTCCAAGAGCTTAACTACCCTAAAGGCGCAGAGAAGGTATTAATGGACGTTGATGACACTATGACTAC CTGTTCACTGCGTCAAATCGTTGGTACAGCTGTAGGTGGTGGTAACATTACTTCATCTTGGGGAACTTATATGATCCCTG CAGCAACGGCAAAACGTCCAATTCCTGCTGGTGCAATCTTACTGGGTACCCTGTGTATCATCGTCGCTATTATTGGTTAC CCTATGGATATCGCAGTATGGCAACCAGTAATGTCTATCGCACTACTTGTTGGCGTATTCTTGCCTCTACTTGAAGCGGG TATGCAGATGGTGAAGGACACTAAGAGCAGCCAATCTGCCGGTATCTGTATTTTTGCCGCGTTTGTTGCAAACCCAGTTC TGGCTTGGGCATTAACTATGTTCCTAGACAATAACGGACTGATCGGTGACAAAGAGCGTGCTAAATCACTATCTGTGGTT GACCGTATCGTTATTCCAGGTCTTGCTTTTGTGATCTGTTTAGCGGCTATGCTTGCAGTGGGTATGATCACTGGTATCCC AGCTCTTTTATAA
Upstream 100 bases:
>100_bases GCTAAGCGAGCGCCTAATACTAAAGTTAATACTCAAGGACCACTAAAAGTTGTCATCGCATTAGATGAATCACTATGTTC TTCTCGGAGAATGAGAAATT
Downstream 100 bases:
>100_bases AATAGATAGCGAGAAGAGTGACTCTTCTCGCTTCCTAACACTATCATCAATGTTACCGATAATAGGTAGCAGAACATATT AAAACACTTTGTCATCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Xanthine/Uracil/Vitamin C Permease; LOW QUALITY PROTEIN Integral Membrane Protein; Permease Family Protein
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSETVKNEQMEDSTKSYRELHRPASEFETREEYLDNELKIMKPRRWGLNLPGRDFRFEWEDFVPAIAGTIGITVMYSAVM AAWAAGLSERWDHINLGAEFATQVVRVEMLIPALLFCILSSGFFNPKANLAGNHGPMIPLIGAIALAGAHPLALAILLGV FGLILSYVKGGSRLVNLTSSGVAGGLLVFLGFMGAEGQISSLFDWASNLQSKHNLDYSLGYVAFFILLANVVLYAVLAKI GKRWLAIPLCSIAAVAMAFGLGAGLDLQFVTEPGIPNLNPVYWWGSTEHGWQLGLPNLQHFIASLPFAILAVAMWSPDFL GHRIFQELNYPKGAEKVLMDVDDTMTTCSLRQIVGTAVGGGNITSSWGTYMIPAATAKRPIPAGAILLGTLCIIVAIIGY PMDIAVWQPVMSIALLVGVFLPLLEAGMQMVKDTKSSQSAGICIFAAFVANPVLAWALTMFLDNNGLIGDKERAKSLSVV DRIVIPGLAFVICLAAMLAVGMITGIPALL
Sequences:
>Translated_510_residues MSETVKNEQMEDSTKSYRELHRPASEFETREEYLDNELKIMKPRRWGLNLPGRDFRFEWEDFVPAIAGTIGITVMYSAVM AAWAAGLSERWDHINLGAEFATQVVRVEMLIPALLFCILSSGFFNPKANLAGNHGPMIPLIGAIALAGAHPLALAILLGV FGLILSYVKGGSRLVNLTSSGVAGGLLVFLGFMGAEGQISSLFDWASNLQSKHNLDYSLGYVAFFILLANVVLYAVLAKI GKRWLAIPLCSIAAVAMAFGLGAGLDLQFVTEPGIPNLNPVYWWGSTEHGWQLGLPNLQHFIASLPFAILAVAMWSPDFL GHRIFQELNYPKGAEKVLMDVDDTMTTCSLRQIVGTAVGGGNITSSWGTYMIPAATAKRPIPAGAILLGTLCIIVAIIGY PMDIAVWQPVMSIALLVGVFLPLLEAGMQMVKDTKSSQSAGICIFAAFVANPVLAWALTMFLDNNGLIGDKERAKSLSVV DRIVIPGLAFVICLAAMLAVGMITGIPALL >Mature_509_residues SETVKNEQMEDSTKSYRELHRPASEFETREEYLDNELKIMKPRRWGLNLPGRDFRFEWEDFVPAIAGTIGITVMYSAVMA AWAAGLSERWDHINLGAEFATQVVRVEMLIPALLFCILSSGFFNPKANLAGNHGPMIPLIGAIALAGAHPLALAILLGVF GLILSYVKGGSRLVNLTSSGVAGGLLVFLGFMGAEGQISSLFDWASNLQSKHNLDYSLGYVAFFILLANVVLYAVLAKIG KRWLAIPLCSIAAVAMAFGLGAGLDLQFVTEPGIPNLNPVYWWGSTEHGWQLGLPNLQHFIASLPFAILAVAMWSPDFLG HRIFQELNYPKGAEKVLMDVDDTMTTCSLRQIVGTAVGGGNITSSWGTYMIPAATAKRPIPAGAILLGTLCIIVAIIGYP MDIAVWQPVMSIALLVGVFLPLLEAGMQMVKDTKSSQSAGICIFAAFVANPVLAWALTMFLDNNGLIGDKERAKSLSVVD RIVIPGLAFVICLAAMLAVGMITGIPALL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54931; Mature: 54800
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETVKNEQMEDSTKSYRELHRPASEFETREEYLDNELKIMKPRRWGLNLPGRDFRFEWE CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHH DFVPAIAGTIGITVMYSAVMAAWAAGLSERWDHINLGAEFATQVVRVEMLIPALLFCILS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SGFFNPKANLAGNHGPMIPLIGAIALAGAHPLALAILLGVFGLILSYVKGGSRLVNLTSS CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GVAGGLLVFLGFMGAEGQISSLFDWASNLQSKHNLDYSLGYVAFFILLANVVLYAVLAKI CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GKRWLAIPLCSIAAVAMAFGLGAGLDLQFVTEPGIPNLNPVYWWGSTEHGWQLGLPNLQH HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHH FIASLPFAILAVAMWSPDFLGHRIFQELNYPKGAEKVLMDVDDTMTTCSLRQIVGTAVGG HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC GNITSSWGTYMIPAATAKRPIPAGAILLGTLCIIVAIIGYPMDIAVWQPVMSIALLVGVF CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LPLLEAGMQMVKDTKSSQSAGICIFAAFVANPVLAWALTMFLDNNGLIGDKERAKSLSVV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DRIVIPGLAFVICLAAMLAVGMITGIPALL HHHHHHHHHHHHHHHHHHHHHHHHCCHHCC >Mature Secondary Structure SETVKNEQMEDSTKSYRELHRPASEFETREEYLDNELKIMKPRRWGLNLPGRDFRFEWE CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHH DFVPAIAGTIGITVMYSAVMAAWAAGLSERWDHINLGAEFATQVVRVEMLIPALLFCILS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SGFFNPKANLAGNHGPMIPLIGAIALAGAHPLALAILLGVFGLILSYVKGGSRLVNLTSS CCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GVAGGLLVFLGFMGAEGQISSLFDWASNLQSKHNLDYSLGYVAFFILLANVVLYAVLAKI CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GKRWLAIPLCSIAAVAMAFGLGAGLDLQFVTEPGIPNLNPVYWWGSTEHGWQLGLPNLQH HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHH FIASLPFAILAVAMWSPDFLGHRIFQELNYPKGAEKVLMDVDDTMTTCSLRQIVGTAVGG HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC GNITSSWGTYMIPAATAKRPIPAGAILLGTLCIIVAIIGYPMDIAVWQPVMSIALLVGVF CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LPLLEAGMQMVKDTKSSQSAGICIFAAFVANPVLAWALTMFLDNNGLIGDKERAKSLSVV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DRIVIPGLAFVICLAAMLAVGMITGIPALL HHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA