| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157961442
Identifier: 157961442
GI number: 157961442
Start: 1955564
End: 1958437
Strand: Direct
Name: 157961442
Synonym: Spea_1616
Alternate gene names: NA
Gene position: 1955564-1958437 (Clockwise)
Preceding gene: 157961439
Following gene: 157961443
Centisome position: 37.79
GC content: 47.01
Gene sequence:
>2874_bases ATGAACTTTCGCACATCGCATCTTGTCGGCTTAATAGCCACGGGGTTAGTGGCTATTGCTGCCCCTTCGATTAACCCGGT TGCTGCTGAGCCATTAAAAATTACAGGGCCAGATGGCCAAGTAAGACTCAATGAGCAGAATAGTCAAAGCATTCGTCAAT ACGGTCCGACAACCTCGGCAGATACTTTCTGGAGTATTGCGCAGGCCGTAAAGCCTGATAATAGTGTCACCGTTTACCAA GTGATGACGGCACTATATGACGCCAATCCCCACGCATTTTCAAGTAAAAACTATAACAGCCTAGAACGCGGCATGATTTT GTTGGTGCCGACTAAAGCTGTAATGCAGCAGACCTCTCAAATTGACGCCAAAGCACGCGCCGAGCGTAACGATCGTAACT GGTCAACAGCTGTCGCTAAATCGAGTGTGGCTCCTAAAACCGTCGTTCAAAAAACTGTGCCTCCAGAGGCTGTTGCTGCA AAGATTGAAGCGCAAAAAGTGACAGTTGCTAAACCCTCCGTTGGCGTAAAGTCAAATCCAGTGATTGCAGAGTTATCGGC AGAAGTTGATGCCCTAACTAAACAGATGGAAGAGATCCAAGCACTAAACCTCGAGCTAACTGATGAGCTTGCAAGGGCAA GCGATGAAATAGTGGTTGGCTCAACGGATACCGAGGCGTTTCAGCAACAAATCACCCAGCTTAAAGAAGAAAATGCGCTG CTAAAGCAGGCACTACAAGATACTAAATCTGAGAATGAAGCTTTAAATCAACAATTACAGCTTAAGCAGCAACAGCTTGC CGCATCAAGTGCACCTGAGCAGGAGCCAACGTCGGATCTTTGGCGAACCTTAATGGATAACCCATTGCTATTGATGCTTG GTGCGGCATTACCCGCTTTAATCGTAGTGGCGCTGTTTTGGTTGTTTATTCGCCGCAGAAGTGATGCGAATTCTGAGCAG CAGGAGAGTGGAGGCGCTGCTGAGAACGAACTAAGTGGCATGAAAGATGACACTGCCATCGAAGATAAGTCTGACGATGC CGACGGATTAGCGGTTCATTTAGATACTGACGACGCTGCAGTGCAGGCTCCATTGCAGGAGCTTGCGGTCGTAGGTGCTG TAACTCAGGCAGAGCAAGAAGAGCAAGATATTGTTGTTGAAGACTCTCATGATGAAGGCCAGTCATTAGACGATCTGTGG GCCGAGGCGATGGGTGAGCAAGAGCAAGATGGAGCCAATGATTTTGATGCGTTTCAAAAGCAATCTAAGTCGCCAGAAGA AGAGGACTTGGACTCATTGCTTGCAGGTTTCGATGAACCTGCAGAGCAAGCTGACGAAGACCTATCTCTGAATGAGAAGC CTTTTGTTGCTGAAGACGATGATTTAGATGCACTGTTAGCAGGGTTCGATGAACCGGCAGAGCAAGCTGACGATAATGAG CAGTCTTTTGTTGCTCAAGGTGTTGCTCAGGGCAGTAGTCAAGAAAGCGCTCAAGACGATACTCAAAATGACGATTTAGA TGCGTTGCTAGCAAGCTTCGATGAACCTGCAGAGCAGGCTGTTGGCACTCAAGAAGATGATATCGATGCTTTGCTTGCCG ATTTTGATTCTGAAAATCAGCAGCTAGAGGAGGCTCATGAGCCAGAAGTTAAGGTCGCCGAGGATGACTTAGATGCGTTG TTAGCAGAGCTTGATGATAAACCTCATGACGAATACAACGCCGACGCGCTTTCAGATGAGATGGCCGCCGAACTCGAGCT TGGTTTCGAGATAGCTGCAGAGCTTGATTTATCAGAGGATGACGCACAGCAAGCTAAGCCTGATAGTGAGCTAGACAGTG AACTTGATGCGCTGCTTGCAGAGTTTGACTCTCCGGCAGATGTTAGTGATATCGAGCAGGAACAAGAGCTACAACAGGCT AGTGAAACTGAGCTTGCTATAACTGAGCCTGCAATTGATGAGACGCCAGTTGAGATAAAAGAGGCGTCAGCGGCAATCAC TAAGGATTCAAGTAGCTTAGATTTCGACTTGAGTGATTTTGAGCCAAGTAGCCTGACAGCAAATACTGATAGCCGTGATG CTGAGCCTAGCAATAATCACGATGAGGAGTTGCTAGAGTTTACTCTGCCAGAACCAGAACCAGAACCAGAACCAGAACCA GAACCAGAACTATCTTCGGAGTTAGATCCTCAAGTAATCGAAAAGACCGATAAAGAGAGTGGTTTCTTCGATGATCTTAA AGGCAATAAGAAAACTGAGGAAAACAGTTTAGATTGGGAAAGTATTGCCGCTCAGAGTGGTAATGATGATCCAGCTGAAC TTGGCGCAGAATTAGCTTTTGCAGCAACTGAAAAAGTTGAAGTGTCTGATGATGAGCTGTTAAGCGGGTTAGTCTCGAAA GGTGCAGCGCAAGATACAGCGCTTGAGCTTGACGCCGATGAGACATTCTCACTCGACGATGATAGTAAGATGACCGTTGA CGAGGCGCTAGCCGCTCTGGATGCTGAAGAATTAGGTGCCAAAGAACTGAGCAAGAGCGCGGTTGCTATGCACGACTTAA CTAGCTTCCAGAAAGATAATGGCTTTATTGATATCGATAGATTGTTGAGCGAAGCCGATGAAGATAGCGGCGAAATCGAT CTTTATAAGGAACTTGATGTCGACATGGGCGAGTTAGATTCGCTAAAGGGCAGTACTCCTATGGTCGATGTCGATGATGA AGAAAACTCGGTTAACGCTAAGTTGGATTTAGCCCGCGCCTATATTGAGATCGATGACAGTGACAGTGCGCGAGCACTAC TAAAAGAGGTCGAACTCGATGGTAATGATCGCCAACAGGCCGAAGCCTTAGGTTTACTCAAAGAGTTAGTGTAA
Upstream 100 bases:
>100_bases CAGGGCAACAGAATCTAGTTTATAGTAATCTCAATAAATACAATTGCCTAAAGCTCGTCACCAGGGTGGTGACTCCAGAG TGCTTTAAAGGGAAGGATTG
Downstream 100 bases:
>100_bases ATTCCTCAACTAAAATCGGCGCCTTTGGCGCCTTTTTTATACTTATCGTTTGCCTTGAGTATGCTAGAATCGCCGGCTAT TAAAAGATTTTGTCTATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: AAA ATPase; Type IV Pilus Assembly Protein TapV; Motility Protein FimV; FimV N-Terminal Domain Protein; Latent Nuclear Antigen; TPR Repeat-Containing Protein; AAA ATPase Containing Von Willebrand Factor Type A
Number of amino acids: Translated: 957; Mature: 957
Protein sequence:
>957_residues MNFRTSHLVGLIATGLVAIAAPSINPVAAEPLKITGPDGQVRLNEQNSQSIRQYGPTTSADTFWSIAQAVKPDNSVTVYQ VMTALYDANPHAFSSKNYNSLERGMILLVPTKAVMQQTSQIDAKARAERNDRNWSTAVAKSSVAPKTVVQKTVPPEAVAA KIEAQKVTVAKPSVGVKSNPVIAELSAEVDALTKQMEEIQALNLELTDELARASDEIVVGSTDTEAFQQQITQLKEENAL LKQALQDTKSENEALNQQLQLKQQQLAASSAPEQEPTSDLWRTLMDNPLLLMLGAALPALIVVALFWLFIRRRSDANSEQ QESGGAAENELSGMKDDTAIEDKSDDADGLAVHLDTDDAAVQAPLQELAVVGAVTQAEQEEQDIVVEDSHDEGQSLDDLW AEAMGEQEQDGANDFDAFQKQSKSPEEEDLDSLLAGFDEPAEQADEDLSLNEKPFVAEDDDLDALLAGFDEPAEQADDNE QSFVAQGVAQGSSQESAQDDTQNDDLDALLASFDEPAEQAVGTQEDDIDALLADFDSENQQLEEAHEPEVKVAEDDLDAL LAELDDKPHDEYNADALSDEMAAELELGFEIAAELDLSEDDAQQAKPDSELDSELDALLAEFDSPADVSDIEQEQELQQA SETELAITEPAIDETPVEIKEASAAITKDSSSLDFDLSDFEPSSLTANTDSRDAEPSNNHDEELLEFTLPEPEPEPEPEP EPELSSELDPQVIEKTDKESGFFDDLKGNKKTEENSLDWESIAAQSGNDDPAELGAELAFAATEKVEVSDDELLSGLVSK GAAQDTALELDADETFSLDDDSKMTVDEALAALDAEELGAKELSKSAVAMHDLTSFQKDNGFIDIDRLLSEADEDSGEID LYKELDVDMGELDSLKGSTPMVDVDDEENSVNAKLDLARAYIEIDDSDSARALLKEVELDGNDRQQAEALGLLKELV
Sequences:
>Translated_957_residues MNFRTSHLVGLIATGLVAIAAPSINPVAAEPLKITGPDGQVRLNEQNSQSIRQYGPTTSADTFWSIAQAVKPDNSVTVYQ VMTALYDANPHAFSSKNYNSLERGMILLVPTKAVMQQTSQIDAKARAERNDRNWSTAVAKSSVAPKTVVQKTVPPEAVAA KIEAQKVTVAKPSVGVKSNPVIAELSAEVDALTKQMEEIQALNLELTDELARASDEIVVGSTDTEAFQQQITQLKEENAL LKQALQDTKSENEALNQQLQLKQQQLAASSAPEQEPTSDLWRTLMDNPLLLMLGAALPALIVVALFWLFIRRRSDANSEQ QESGGAAENELSGMKDDTAIEDKSDDADGLAVHLDTDDAAVQAPLQELAVVGAVTQAEQEEQDIVVEDSHDEGQSLDDLW AEAMGEQEQDGANDFDAFQKQSKSPEEEDLDSLLAGFDEPAEQADEDLSLNEKPFVAEDDDLDALLAGFDEPAEQADDNE QSFVAQGVAQGSSQESAQDDTQNDDLDALLASFDEPAEQAVGTQEDDIDALLADFDSENQQLEEAHEPEVKVAEDDLDAL LAELDDKPHDEYNADALSDEMAAELELGFEIAAELDLSEDDAQQAKPDSELDSELDALLAEFDSPADVSDIEQEQELQQA SETELAITEPAIDETPVEIKEASAAITKDSSSLDFDLSDFEPSSLTANTDSRDAEPSNNHDEELLEFTLPEPEPEPEPEP EPELSSELDPQVIEKTDKESGFFDDLKGNKKTEENSLDWESIAAQSGNDDPAELGAELAFAATEKVEVSDDELLSGLVSK GAAQDTALELDADETFSLDDDSKMTVDEALAALDAEELGAKELSKSAVAMHDLTSFQKDNGFIDIDRLLSEADEDSGEID LYKELDVDMGELDSLKGSTPMVDVDDEENSVNAKLDLARAYIEIDDSDSARALLKEVELDGNDRQQAEALGLLKELV >Mature_957_residues MNFRTSHLVGLIATGLVAIAAPSINPVAAEPLKITGPDGQVRLNEQNSQSIRQYGPTTSADTFWSIAQAVKPDNSVTVYQ VMTALYDANPHAFSSKNYNSLERGMILLVPTKAVMQQTSQIDAKARAERNDRNWSTAVAKSSVAPKTVVQKTVPPEAVAA KIEAQKVTVAKPSVGVKSNPVIAELSAEVDALTKQMEEIQALNLELTDELARASDEIVVGSTDTEAFQQQITQLKEENAL LKQALQDTKSENEALNQQLQLKQQQLAASSAPEQEPTSDLWRTLMDNPLLLMLGAALPALIVVALFWLFIRRRSDANSEQ QESGGAAENELSGMKDDTAIEDKSDDADGLAVHLDTDDAAVQAPLQELAVVGAVTQAEQEEQDIVVEDSHDEGQSLDDLW AEAMGEQEQDGANDFDAFQKQSKSPEEEDLDSLLAGFDEPAEQADEDLSLNEKPFVAEDDDLDALLAGFDEPAEQADDNE QSFVAQGVAQGSSQESAQDDTQNDDLDALLASFDEPAEQAVGTQEDDIDALLADFDSENQQLEEAHEPEVKVAEDDLDAL LAELDDKPHDEYNADALSDEMAAELELGFEIAAELDLSEDDAQQAKPDSELDSELDALLAEFDSPADVSDIEQEQELQQA SETELAITEPAIDETPVEIKEASAAITKDSSSLDFDLSDFEPSSLTANTDSRDAEPSNNHDEELLEFTLPEPEPEPEPEP EPELSSELDPQVIEKTDKESGFFDDLKGNKKTEENSLDWESIAAQSGNDDPAELGAELAFAATEKVEVSDDELLSGLVSK GAAQDTALELDADETFSLDDDSKMTVDEALAALDAEELGAKELSKSAVAMHDLTSFQKDNGFIDIDRLLSEADEDSGEID LYKELDVDMGELDSLKGSTPMVDVDDEENSVNAKLDLARAYIEIDDSDSARALLKEVELDGNDRQQAEALGLLKELV
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103694; Mature: 103694
Theoretical pI: Translated: 3.62; Mature: 3.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFRTSHLVGLIATGLVAIAAPSINPVAAEPLKITGPDGQVRLNEQNSQSIRQYGPTTSA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEECCCCHHHHHHCCCCCCH DTFWSIAQAVKPDNSVTVYQVMTALYDANPHAFSSKNYNSLERGMILLVPTKAVMQQTSQ HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHH IDAKARAERNDRNWSTAVAKSSVAPKTVVQKTVPPEAVAAKIEAQKVTVAKPSVGVKSNP HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCC VIAELSAEVDALTKQMEEIQALNLELTDELARASDEIVVGSTDTEAFQQQITQLKEENAL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH LKQALQDTKSENEALNQQLQLKQQQLAASSAPEQEPTSDLWRTLMDNPLLLMLGAALPAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH IVVALFWLFIRRRSDANSEQQESGGAAENELSGMKDDTAIEDKSDDADGLAVHLDTDDAA HHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHH VQAPLQELAVVGAVTQAEQEEQDIVVEDSHDEGQSLDDLWAEAMGEQEQDGANDFDAFQK HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH QSKSPEEEDLDSLLAGFDEPAEQADEDLSLNEKPFVAEDDDLDALLAGFDEPAEQADDNE HCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCH QSFVAQGVAQGSSQESAQDDTQNDDLDALLASFDEPAEQAVGTQEDDIDALLADFDSENQ HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCHH QLEEAHEPEVKVAEDDLDALLAELDDKPHDEYNADALSDEMAAELELGFEIAAELDLSED HHHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEECCCCCC DAQQAKPDSELDSELDALLAEFDSPADVSDIEQEQELQQASETELAITEPAIDETPVEIK HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH EASAAITKDSSSLDFDLSDFEPSSLTANTDSRDAEPSNNHDEELLEFTLPEPEPEPEPEP HHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC EPELSSELDPQVIEKTDKESGFFDDLKGNKKTEENSLDWESIAAQSGNDDPAELGAELAF CCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHH AATEKVEVSDDELLSGLVSKGAAQDTALELDADETFSLDDDSKMTVDEALAALDAEELGA HHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCHHHHCH KELSKSAVAMHDLTSFQKDNGFIDIDRLLSEADEDSGEIDLYKELDVDMGELDSLKGSTP HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCEEEHHHCCCCHHHHHHCCCCCC MVDVDDEENSVNAKLDLARAYIEIDDSDSARALLKEVELDGNDRQQAEALGLLKELV EEECCCCCCCCCHHEEEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC >Mature Secondary Structure MNFRTSHLVGLIATGLVAIAAPSINPVAAEPLKITGPDGQVRLNEQNSQSIRQYGPTTSA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEECCCCHHHHHHCCCCCCH DTFWSIAQAVKPDNSVTVYQVMTALYDANPHAFSSKNYNSLERGMILLVPTKAVMQQTSQ HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHH IDAKARAERNDRNWSTAVAKSSVAPKTVVQKTVPPEAVAAKIEAQKVTVAKPSVGVKSNP HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCC VIAELSAEVDALTKQMEEIQALNLELTDELARASDEIVVGSTDTEAFQQQITQLKEENAL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH LKQALQDTKSENEALNQQLQLKQQQLAASSAPEQEPTSDLWRTLMDNPLLLMLGAALPAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH IVVALFWLFIRRRSDANSEQQESGGAAENELSGMKDDTAIEDKSDDADGLAVHLDTDDAA HHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHH VQAPLQELAVVGAVTQAEQEEQDIVVEDSHDEGQSLDDLWAEAMGEQEQDGANDFDAFQK HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH QSKSPEEEDLDSLLAGFDEPAEQADEDLSLNEKPFVAEDDDLDALLAGFDEPAEQADDNE HCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCH QSFVAQGVAQGSSQESAQDDTQNDDLDALLASFDEPAEQAVGTQEDDIDALLADFDSENQ HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCHH QLEEAHEPEVKVAEDDLDALLAELDDKPHDEYNADALSDEMAAELELGFEIAAELDLSED HHHHHCCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEECCCCCC DAQQAKPDSELDSELDALLAEFDSPADVSDIEQEQELQQASETELAITEPAIDETPVEIK HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH EASAAITKDSSSLDFDLSDFEPSSLTANTDSRDAEPSNNHDEELLEFTLPEPEPEPEPEP HHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC EPELSSELDPQVIEKTDKESGFFDDLKGNKKTEENSLDWESIAAQSGNDDPAELGAELAF CCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHH AATEKVEVSDDELLSGLVSKGAAQDTALELDADETFSLDDDSKMTVDEALAALDAEELGA HHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCHHHHCH KELSKSAVAMHDLTSFQKDNGFIDIDRLLSEADEDSGEIDLYKELDVDMGELDSLKGSTP HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCEEEHHHCCCCHHHHHHCCCCCC MVDVDDEENSVNAKLDLARAYIEIDDSDSARALLKEVELDGNDRQQAEALGLLKELV EEECCCCCCCCCHHEEEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA