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The map label for this gene is ybbK [C]

Identifier: 157961397

GI number: 157961397

Start: 1907819

End: 1908595

Strand: Reverse

Name: ybbK [C]

Synonym: Spea_1571

Alternate gene names: 157961397

Gene position: 1908595-1907819 (Counterclockwise)

Preceding gene: 157961398

Following gene: 157961395

Centisome position: 36.88

GC content: 49.03

Gene sequence:

>777_bases
ATGGAACCCATCGTCAGTAATGGCAGCATTTTTATAGGCATATTGACCTTCCTACTCGTTGGCTTGCTCGTCAGTATGTT
TAAGATCTTAAGGGAGTATGAGCGTGGCGTGATCTTCCTTTTAGGCCGTTTTTATCAGGTGAAAGGGCCAGGACTCATCA
TAGTGATCCCTATTGTTCAACAGATGGTGCGAGTCGACTTACGAACCGTGGTGATGGATGTGCCAACTCAGGACGTGATC
AGTCGCGATAACGTCTCTGTACGGGTCAATGCGGTGATCTACTTTAGGGTGATCGATGCTCAAAAAGCCATTATCAATGT
CGAGGATTACTTACAGGCCACCTCACAGCTGGCACAAACCACCTTACGTTCGGTGCTCGGTCAACATGAACTCGATGAGA
TGCTGGCCAATCGAGAGATGCTCAATACCGATATTCAGGCCATTCTCGATACCCGAACCGATGGTTGGGGCATTAAAGTT
TCCAACGTCGAGATCAAACATGTGGATCTGAACGAAACCATGATCCGCGCTATCGCGAGACAAGCCGAAGCCGAGCGTAC
TCGCCGAGCAAAAGTGATCCATGCATCCGGTGAGATGGAAGCCTCGGCAAAATTAGTCGAAGCCGCGGAAAAACTATCAA
CCGAGCCTAACGCCATATTGCTGCGTTATCTGCAAACCCTTACCGAGATTGCAGGGGAGAAAAACTCTACCATACTGTTT
CCCCTGCCTATGGACCTGCTGAAGGGCGTGCTAGGCAAACAAGACAAAAAGCCCTAA

Upstream 100 bases:

>100_bases
GCGCAGCAAGTGACGGTTATTGTACGTCACGACCTTTCATTGGAGGTCGAACTGACTCCAGTTTCTAATCAAGAAGCACT
AAATAGCTAAGGAACCGAAT

Downstream 100 bases:

>100_bases
CTCTAGATACAACAAAGCCCTCAACTATCACTAGATAATCGAGGGCTTTTAGCGGTAAAAGGTGAAGCGTTAGCTGTTAA
CTTTTACTTGAGCAGGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MEPIVSNGSIFIGILTFLLVGLLVSMFKILREYERGVIFLLGRFYQVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSTEPNAILLRYLQTLTEIAGEKNSTILF
PLPMDLLKGVLGKQDKKP

Sequences:

>Translated_258_residues
MEPIVSNGSIFIGILTFLLVGLLVSMFKILREYERGVIFLLGRFYQVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSTEPNAILLRYLQTLTEIAGEKNSTILF
PLPMDLLKGVLGKQDKKP
>Mature_258_residues
MEPIVSNGSIFIGILTFLLVGLLVSMFKILREYERGVIFLLGRFYQVKGPGLIIVIPIVQQMVRVDLRTVVMDVPTQDVI
SRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQTTLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKV
SNVEIKHVDLNETMIRAIARQAEAERTRRAKVIHASGEMEASAKLVEAAEKLSTEPNAILLRYLQTLTEIAGEKNSTILF
PLPMDLLKGVLGKQDKKP

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=245, Percent_Identity=49.3877551020408, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI221316744, Length=245, Percent_Identity=49.3877551020408, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI38016911, Length=243, Percent_Identity=47.7366255144033, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI7657615, Length=238, Percent_Identity=36.1344537815126, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI7305503, Length=181, Percent_Identity=35.9116022099448, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=30.5732484076433, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI38016907, Length=64, Percent_Identity=59.375, Blast_Score=79, Evalue=6e-15,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=37.037037037037, Blast_Score=130, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI25153583, Length=253, Percent_Identity=46.2450592885375, Blast_Score=207, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=251, Percent_Identity=46.6135458167331, Blast_Score=206, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI17569499, Length=243, Percent_Identity=48.559670781893, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI71987612, Length=251, Percent_Identity=46.6135458167331, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17569497, Length=256, Percent_Identity=41.796875, Blast_Score=205, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17569493, Length=247, Percent_Identity=45.3441295546559, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI193209764, Length=247, Percent_Identity=45.3441295546559, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17570459, Length=253, Percent_Identity=45.8498023715415, Blast_Score=204, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI193210507, Length=245, Percent_Identity=44.4897959183673, Blast_Score=186, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17570161, Length=245, Percent_Identity=44.4897959183673, Blast_Score=186, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI71989948, Length=238, Percent_Identity=44.9579831932773, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=237, Percent_Identity=45.5696202531646, Blast_Score=176, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=46.9945355191257, Blast_Score=142, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI32564147, Length=184, Percent_Identity=34.7826086956522, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71989963, Length=114, Percent_Identity=50.8771929824561, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=168, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321571, Length=263, Percent_Identity=26.615969581749, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45556022, Length=248, Percent_Identity=50.8064516129032, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI18860517, Length=254, Percent_Identity=46.8503937007874, Blast_Score=210, Evalue=8e-55,
Organism=Drosophila melanogaster, GI24657857, Length=260, Percent_Identity=48.0769230769231, Blast_Score=205, Evalue=3e-53,
Organism=Drosophila melanogaster, GI281365664, Length=256, Percent_Identity=48.4375, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI62484448, Length=260, Percent_Identity=48.0769230769231, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI62484274, Length=260, Percent_Identity=48.0769230769231, Blast_Score=204, Evalue=6e-53,
Organism=Drosophila melanogaster, GI28573263, Length=254, Percent_Identity=37.007874015748, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI21356845, Length=253, Percent_Identity=36.3636363636364, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281361633, Length=248, Percent_Identity=35.8870967741936, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI281361631, Length=248, Percent_Identity=35.8870967741936, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI281361635, Length=186, Percent_Identity=36.5591397849462, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI45550506, Length=181, Percent_Identity=36.4640883977901, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28880; Mature: 28880

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIVSNGSIFIGILTFLLVGLLVSMFKILREYERGVIFLLGRFYQVKGPGLIIVIPIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPTQDVISRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKVSNVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCHHHHHHHHHH
QAEAERTRRAKVIHASGEMEASAKLVEAAEKLSTEPNAILLRYLQTLTEIAGEKNSTILF
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPMDLLKGVLGKQDKKP
ECCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEPIVSNGSIFIGILTFLLVGLLVSMFKILREYERGVIFLLGRFYQVKGPGLIIVIPIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPTQDVISRDNVSVRVNAVIYFRVIDAQKAIINVEDYLQATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANREMLNTDIQAILDTRTDGWGIKVSNVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCHHHHHHHHHH
QAEAERTRRAKVIHASGEMEASAKLVEAAEKLSTEPNAILLRYLQTLTEIAGEKNSTILF
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPMDLLKGVLGKQDKKP
ECCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]