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The map label for this gene is ycdX [C]

Identifier: 157961262

GI number: 157961262

Start: 1748151

End: 1748933

Strand: Direct

Name: ycdX [C]

Synonym: Spea_1436

Alternate gene names: 157961262

Gene position: 1748151-1748933 (Clockwise)

Preceding gene: 157961261

Following gene: 157961263

Centisome position: 33.78

GC content: 45.85

Gene sequence:

>783_bases
TTGTTTCAAACTTTTTGTAATGAAGAGACCGCCATGAAATATCTTGTTGATACCCATACTCATACGATTGCTTCGACCCA
TGCTTATAGTACGTTGCAAGAATATATTGCGATGGCCAAGCATAAAGGCATTAAGTTATTTGCCACTACCGACCATGGGC
CCGATATGGCCGACGCCCCCCACTTTTGGCATTTTGTGAACTTACGAGTATTACCACGAATTGTTGATGGCGTGGGCATT
TTACGAGGCATCGAAGCCAATATTAAAAATGTGGTCGGAGAGATAGACTTCTTTGGTGATTACCTGCAAGAGTTAGATAT
TGTTCTCGCCGGTTTTCATGAACCCGTTTTTGCGCCAAGCAATAAAGAAACTCATACTGCTGCACTTATAAACTGTATCA
TGAGTGGTCATGTCGATATCATTACTCATCCAGGCAACCCAGCTTACCCAATAGACATTGCTGCCGTTGCCAAGGCAGCC
GCCGAGAATAATGTCGCCCTTGAGATCAATAACTCCTCTTTTTTAACTTCTCGAAAAGGCAGTGAACATAACTGTTTGGC
CATTGCCAAGGCGGTTAAAGAGGCGGGCGGGCTATTGGTGATGGGCTCTGATTCTCACGTGGCATACAGCCTAGGAGATT
TCACTCAGGCCGAGCAGATTATCGAGCAAGCCGATTTTCCCATTGAGCGTTTGCTCAACCGTAGCCCCGAGGCTTTACTG
GCATTTTTGTCAGCAAGAGGCCATGGCTCGCTCGATGAATATTCGGCGCTACTCGAAAACTAA

Upstream 100 bases:

>100_bases
TTAAGTCACTAAAACCTTAACTAATGTTTTAGTATTAAGTAATCAAGCTTATCGATAGAGCTCAGCAAATGAAAAGAGTA
GACTGAGGGTCTACTCTTTT

Downstream 100 bases:

>100_bases
AACCAAAACTAAAACTAAAACCAAAAAGATAGCAGAGATAATTAAAGTAAGATGAGAATTCTTATCACAGGAGCCGCAGG
TCAACTTGGACAGGCATTGC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MFQTFCNEETAMKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRIVDGVGI
LRGIEANIKNVVGEIDFFGDYLQELDIVLAGFHEPVFAPSNKETHTAALINCIMSGHVDIITHPGNPAYPIDIAAVAKAA
AENNVALEINNSSFLTSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTQAEQIIEQADFPIERLLNRSPEALL
AFLSARGHGSLDEYSALLEN

Sequences:

>Translated_260_residues
MFQTFCNEETAMKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRIVDGVGI
LRGIEANIKNVVGEIDFFGDYLQELDIVLAGFHEPVFAPSNKETHTAALINCIMSGHVDIITHPGNPAYPIDIAAVAKAA
AENNVALEINNSSFLTSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTQAEQIIEQADFPIERLLNRSPEALL
AFLSARGHGSLDEYSALLEN
>Mature_260_residues
MFQTFCNEETAMKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAPHFWHFVNLRVLPRIVDGVGI
LRGIEANIKNVVGEIDFFGDYLQELDIVLAGFHEPVFAPSNKETHTAALINCIMSGHVDIITHPGNPAYPIDIAAVAKAA
AENNVALEINNSSFLTSRKGSEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTQAEQIIEQADFPIERLLNRSPEALL
AFLSARGHGSLDEYSALLEN

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=244, Percent_Identity=63.5245901639344, Blast_Score=315, Evalue=2e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 28356; Mature: 28356

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTFCNEETAMKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAP
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
HFWHFVNLRVLPRIVDGVGILRGIEANIKNVVGEIDFFGDYLQELDIVLAGFHEPVFAPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NKETHTAALINCIMSGHVDIITHPGNPAYPIDIAAVAKAAAENNVALEINNSSFLTSRKG
CCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEECCCC
SEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTQAEQIIEQADFPIERLLNRSPEALL
CCCHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCHHHHH
AFLSARGHGSLDEYSALLEN
HHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MFQTFCNEETAMKYLVDTHTHTIASTHAYSTLQEYIAMAKHKGIKLFATTDHGPDMADAP
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
HFWHFVNLRVLPRIVDGVGILRGIEANIKNVVGEIDFFGDYLQELDIVLAGFHEPVFAPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NKETHTAALINCIMSGHVDIITHPGNPAYPIDIAAVAKAAAENNVALEINNSSFLTSRKG
CCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEECCCC
SEHNCLAIAKAVKEAGGLLVMGSDSHVAYSLGDFTQAEQIIEQADFPIERLLNRSPEALL
CCCHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCHHHHH
AFLSARGHGSLDEYSALLEN
HHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA