| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is wzxC [C]
Identifier: 157961252
GI number: 157961252
Start: 1733240
End: 1734607
Strand: Reverse
Name: wzxC [C]
Synonym: Spea_1426
Alternate gene names: 157961252
Gene position: 1734607-1733240 (Counterclockwise)
Preceding gene: 157961253
Following gene: 157961251
Centisome position: 33.52
GC content: 47.08
Gene sequence:
>1368_bases ATGCAAAGCTATGTGTCATACCGAGACTCTTTATCCACAGCCTTAAACGGCGTGCTAGCCAAAGGCCTATTTTGGCTAGG TTCGGCTCAAGTGCTTGGCCGCATCGTTCGCCTAGGCTCTAGCATTATTATTGCGCGCTTACTGACACCCGAAGTCTTTG GTCAGGTTGCCATCATACTCACCTGTTTTGAGATCATCTGCACCCCAACGCGTCGCATCTCTAGCGCGGCACTGATTAAA ATGGATGACAACCAAGTTAAACAATCTCTTACTGCGGCCAATCGAGTTAACTGGTTAGCCGCTATCACCGCCTTCGTTGC CATGAGCTTACTCAGCTGGCCGCTTGCAATCTACTACGATGACTTGCAGCTAATTCTTCCTATGATACTCATGGCAACAA GCTATTTACTGCTGCCTTTTGGCATGCTCTATGCCGCACTCAATCTGCGCTTAAACCGAATGCGAGTCGTTGGTAGGGCC GTACTATGGCAGACGGTATTTGATGCACTGCTAACGGGCTGCTTCGCTTTACTCGGGTTTGGGATTTGGGCGATTATTTT GCCCAAAGTCATTGTGGTATTTATATGGATTGGGGTTCATAGATACCACAATCCCTTGCCTGAGGCCTCATCGAGCGCAA ATTCCTTACCCCCGTCCCAAGAACAGCGATGGCAGCCACTTCCTCTGTTGCCAGCAAAATCCAAAACAATACTTAAGTTT GGCATACAAGTTGGCCTAGGTGACTTGGCTATCGCTCTAAGGCAAAATATTGATTACATCTTGGTGGGCTATTTTCTTGG GATAGAAGCCCTAGGAGTGTACTTCTTTGCCTTCAACGCCAGTTTAGGCATTAGTTTAGGGCTAGTACAAAGTTATGGCA CCGCGCTTTATTCCTATCTTTGTCAAAAAGATAAAGATGCTGAACCCACACTGCTTACATTAGAGCAAAAATACTTTAAG TCACTTAAGTTCATCATGTTACTGACAGTACCCGTAATTAGCCTGCAAGCAGCACTCGCACCACTCTATGTCCCTTGGGT GTACGGTCAGAAATGGTTAGATGCTGGCGCACTGCCAGTGTTTATCTTGCTTTGCCTAAGCGGCCTCGTGAGGCCACTAG GAGAAGCAGCCAGTCAATATCTTATTAGTGCCGGTAGAAGCCAATTTAACCTGTTGTATAACAGTGTATTCACTTTCATT TTGGCAGTCACAATCGCTATCTCTAGCAGCTGGGGGCTACAGGCCGTCGCCCTAGGGATCTTATTGTCACACCTTTTTGT TATGCCCAGTTTCACACTCTACTTAAAGCTGACTCAAACCACTACAGACGCTCCTCATTGTCGCTCGGAGGCACACTATG ACTGCTAA
Upstream 100 bases:
>100_bases CCTGTATTTAACCTTATAACTCGTCACTAATAACCAATGACTGGTGATGTCATCACTCAAATAGATGTGATTCGCAGCGG CCTCTTAAACAGGTACTCCT
Downstream 100 bases:
>100_bases TTTAACCTATAAGAAAGTCGCAACCACAAAGGTTTCGGTGGTGATGCCTATCTATAATGTCGAAGCCTTTGTTGAAGATG CGATTATCTCGGTTCTCACC
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Colanic Acid Exporter; Polysaccharide Export Transporter; Polysaccharide Biosynthesis Export Protein-Like; Virulence Factor MVIN Superfamily
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MQSYVSYRDSLSTALNGVLAKGLFWLGSAQVLGRIVRLGSSIIIARLLTPEVFGQVAIILTCFEIICTPTRRISSAALIK MDDNQVKQSLTAANRVNWLAAITAFVAMSLLSWPLAIYYDDLQLILPMILMATSYLLLPFGMLYAALNLRLNRMRVVGRA VLWQTVFDALLTGCFALLGFGIWAIILPKVIVVFIWIGVHRYHNPLPEASSSANSLPPSQEQRWQPLPLLPAKSKTILKF GIQVGLGDLAIALRQNIDYILVGYFLGIEALGVYFFAFNASLGISLGLVQSYGTALYSYLCQKDKDAEPTLLTLEQKYFK SLKFIMLLTVPVISLQAALAPLYVPWVYGQKWLDAGALPVFILLCLSGLVRPLGEAASQYLISAGRSQFNLLYNSVFTFI LAVTIAISSSWGLQAVALGILLSHLFVMPSFTLYLKLTQTTTDAPHCRSEAHYDC
Sequences:
>Translated_455_residues MQSYVSYRDSLSTALNGVLAKGLFWLGSAQVLGRIVRLGSSIIIARLLTPEVFGQVAIILTCFEIICTPTRRISSAALIK MDDNQVKQSLTAANRVNWLAAITAFVAMSLLSWPLAIYYDDLQLILPMILMATSYLLLPFGMLYAALNLRLNRMRVVGRA VLWQTVFDALLTGCFALLGFGIWAIILPKVIVVFIWIGVHRYHNPLPEASSSANSLPPSQEQRWQPLPLLPAKSKTILKF GIQVGLGDLAIALRQNIDYILVGYFLGIEALGVYFFAFNASLGISLGLVQSYGTALYSYLCQKDKDAEPTLLTLEQKYFK SLKFIMLLTVPVISLQAALAPLYVPWVYGQKWLDAGALPVFILLCLSGLVRPLGEAASQYLISAGRSQFNLLYNSVFTFI LAVTIAISSSWGLQAVALGILLSHLFVMPSFTLYLKLTQTTTDAPHCRSEAHYDC >Mature_455_residues MQSYVSYRDSLSTALNGVLAKGLFWLGSAQVLGRIVRLGSSIIIARLLTPEVFGQVAIILTCFEIICTPTRRISSAALIK MDDNQVKQSLTAANRVNWLAAITAFVAMSLLSWPLAIYYDDLQLILPMILMATSYLLLPFGMLYAALNLRLNRMRVVGRA VLWQTVFDALLTGCFALLGFGIWAIILPKVIVVFIWIGVHRYHNPLPEASSSANSLPPSQEQRWQPLPLLPAKSKTILKF GIQVGLGDLAIALRQNIDYILVGYFLGIEALGVYFFAFNASLGISLGLVQSYGTALYSYLCQKDKDAEPTLLTLEQKYFK SLKFIMLLTVPVISLQAALAPLYVPWVYGQKWLDAGALPVFILLCLSGLVRPLGEAASQYLISAGRSQFNLLYNSVFTFI LAVTIAISSSWGLQAVALGILLSHLFVMPSFTLYLKLTQTTTDAPHCRSEAHYDC
Specific function: Lipopolysaccharide biosynthesis. [C]
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50193; Mature: 50193
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSYVSYRDSLSTALNGVLAKGLFWLGSAQVLGRIVRLGSSIIIARLLTPEVFGQVAIIL CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH TCFEIICTPTRRISSAALIKMDDNQVKQSLTAANRVNWLAAITAFVAMSLLSWPLAIYYD HHHHHHHCCHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH DLQLILPMILMATSYLLLPFGMLYAALNLRLNRMRVVGRAVLWQTVFDALLTGCFALLGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIWAIILPKVIVVFIWIGVHRYHNPLPEASSSANSLPPSQEQRWQPLPLLPAKSKTILKF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHH GIQVGLGDLAIALRQNIDYILVGYFLGIEALGVYFFAFNASLGISLGLVQSYGTALYSYL HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH CQKDKDAEPTLLTLEQKYFKSLKFIMLLTVPVISLQAALAPLYVPWVYGQKWLDAGALPV HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH FILLCLSGLVRPLGEAASQYLISAGRSQFNLLYNSVFTFILAVTIAISSSWGLQAVALGI HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LLSHLFVMPSFTLYLKLTQTTTDAPHCRSEAHYDC HHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MQSYVSYRDSLSTALNGVLAKGLFWLGSAQVLGRIVRLGSSIIIARLLTPEVFGQVAIIL CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH TCFEIICTPTRRISSAALIKMDDNQVKQSLTAANRVNWLAAITAFVAMSLLSWPLAIYYD HHHHHHHCCHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH DLQLILPMILMATSYLLLPFGMLYAALNLRLNRMRVVGRAVLWQTVFDALLTGCFALLGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIWAIILPKVIVVFIWIGVHRYHNPLPEASSSANSLPPSQEQRWQPLPLLPAKSKTILKF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHH GIQVGLGDLAIALRQNIDYILVGYFLGIEALGVYFFAFNASLGISLGLVQSYGTALYSYL HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH CQKDKDAEPTLLTLEQKYFKSLKFIMLLTVPVISLQAALAPLYVPWVYGQKWLDAGALPV HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH FILLCLSGLVRPLGEAASQYLISAGRSQFNLLYNSVFTFILAVTIAISSSWGLQAVALGI HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LLSHLFVMPSFTLYLKLTQTTTDAPHCRSEAHYDC HHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA