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The map label for this gene is yibD [C]

Identifier: 157961251

GI number: 157961251

Start: 1732177

End: 1733250

Strand: Reverse

Name: yibD [C]

Synonym: Spea_1425

Alternate gene names: 157961251

Gene position: 1733250-1732177 (Counterclockwise)

Preceding gene: 157961252

Following gene: 157961250

Centisome position: 33.5

GC content: 45.53

Gene sequence:

>1074_bases
ATGACTGCTAATTTAACCTATAAGAAAGTCGCAACCACAAAGGTTTCGGTGGTGATGCCTATCTATAATGTCGAAGCCTT
TGTTGAAGATGCGATTATCTCGGTTCTCACCCAGAGCTTTAAACACTTTGAACTGTTGTTAATTAACGATTGCTCACCGG
ATAACAGCTTAGCAATCTGCAAAAAATTCAGCGACCCTAGGATCAAGATAATTGAGCATAAGCAAAACCAAGGTCTAGCG
GCTGCGCGAAATACAGGCATTCGTCATGCCATCGGTCAGTATGTGGCATTTATCGATTCTGATGATATGTGGCACAGAGA
AAAGCTAATGCACCATGTCACCCACCTCGACCAAGCTCCCGAAGTCGGCATTAGCTTTTGCCGCTCCTTGTTTATGAACT
TTCAGGGACAAAAAATTCATCTATACCAAATGCCTCGGCTCACTAATATCAAGGCAAGCGACCTGCTGTGTCGTAATCCG
GTAGGTAATGGTTCCGCCCCTGTCATTCGCCGAGAAACCCTATCAGATATTCGGTTTAAGGCGTTAAACAAGAGCCACCC
CCATAGTTGTTATTTCGATGAAAACTTTCGCCAGTCGGAAGATATCGAGTGTTGGTTAAGAATAGTCACTACCACCCACT
GGAAAATCGAGGGGATCCCCGCTCCGCTCACCTTCTATCGATTAAATGCCCAAGGGTTGTCTGCAGATCTAAAAAAACAG
TATGCCTCTTGGGAGAATATGATTAACAAGGCAAAAGGCTATGCACCTGAATTGCTAGCACAACATGAAGCGAGAGCGAG
GGCTTACCAGCTTAGGTATATTGCAAGACAAGCCATTCGAAATAAAGACGGCAAAGAAGCGGTTAAGTACCTGCATCTAG
CTCTAAAAACCGCCCCAGAGATCATTCAGGCTGAAACCGGGCGCACCTTGGCCACCATGGCGGCGGCTTATTTACTAAAA
CTGCTACCACTTAGCCTCTATAAGGTTTTTGAGGAGCTGGCACAGCTTTTACTCGGGCGTATTCAGGCCGCTAAAATAAA
TAGAGATGGAGTCAGCCCTGCACTCTTAAAGTAA

Upstream 100 bases:

>100_bases
ATCTTATTGTCACACCTTTTTGTTATGCCCAGTTTCACACTCTACTTAAAGCTGACTCAAACCACTACAGACGCTCCTCA
TTGTCGCTCGGAGGCACACT

Downstream 100 bases:

>100_bases
ATCCTGCACTCTTAAAATAAGCTCGGCACACCTCAAGAAACAGTTCAAATCCTTCCTCCAAGCCATTTGCAGCCTGCCTT
GCAAGATGCAAATGGCCTCT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MTANLTYKKVATTKVSVVMPIYNVEAFVEDAIISVLTQSFKHFELLLINDCSPDNSLAICKKFSDPRIKIIEHKQNQGLA
AARNTGIRHAIGQYVAFIDSDDMWHREKLMHHVTHLDQAPEVGISFCRSLFMNFQGQKIHLYQMPRLTNIKASDLLCRNP
VGNGSAPVIRRETLSDIRFKALNKSHPHSCYFDENFRQSEDIECWLRIVTTTHWKIEGIPAPLTFYRLNAQGLSADLKKQ
YASWENMINKAKGYAPELLAQHEARARAYQLRYIARQAIRNKDGKEAVKYLHLALKTAPEIIQAETGRTLATMAAAYLLK
LLPLSLYKVFEELAQLLLGRIQAAKINRDGVSPALLK

Sequences:

>Translated_357_residues
MTANLTYKKVATTKVSVVMPIYNVEAFVEDAIISVLTQSFKHFELLLINDCSPDNSLAICKKFSDPRIKIIEHKQNQGLA
AARNTGIRHAIGQYVAFIDSDDMWHREKLMHHVTHLDQAPEVGISFCRSLFMNFQGQKIHLYQMPRLTNIKASDLLCRNP
VGNGSAPVIRRETLSDIRFKALNKSHPHSCYFDENFRQSEDIECWLRIVTTTHWKIEGIPAPLTFYRLNAQGLSADLKKQ
YASWENMINKAKGYAPELLAQHEARARAYQLRYIARQAIRNKDGKEAVKYLHLALKTAPEIIQAETGRTLATMAAAYLLK
LLPLSLYKVFEELAQLLLGRIQAAKINRDGVSPALLK
>Mature_356_residues
TANLTYKKVATTKVSVVMPIYNVEAFVEDAIISVLTQSFKHFELLLINDCSPDNSLAICKKFSDPRIKIIEHKQNQGLAA
ARNTGIRHAIGQYVAFIDSDDMWHREKLMHHVTHLDQAPEVGISFCRSLFMNFQGQKIHLYQMPRLTNIKASDLLCRNPV
GNGSAPVIRRETLSDIRFKALNKSHPHSCYFDENFRQSEDIECWLRIVTTTHWKIEGIPAPLTFYRLNAQGLSADLKKQY
ASWENMINKAKGYAPELLAQHEARARAYQLRYIARQAIRNKDGKEAVKYLHLALKTAPEIIQAETGRTLATMAAAYLLKL
LPLSLYKVFEELAQLLLGRIQAAKINRDGVSPALLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=94, Percent_Identity=40.4255319148936, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788372, Length=213, Percent_Identity=27.6995305164319, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787259, Length=112, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40560; Mature: 40428

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANLTYKKVATTKVSVVMPIYNVEAFVEDAIISVLTQSFKHFELLLINDCSPDNSLAIC
CCCCCCHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHE
KKFSDPRIKIIEHKQNQGLAAARNTGIRHAIGQYVAFIDSDDMWHREKLMHHVTHLDQAP
ECCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCH
EVGISFCRSLFMNFQGQKIHLYQMPRLTNIKASDLLCRNPVGNGSAPVIRRETLSDIRFK
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCEECCCCCCCCCCEEEHHHHHHHHHH
ALNKSHPHSCYFDENFRQSEDIECWLRIVTTTHWKIEGIPAPLTFYRLNAQGLSADLKKQ
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCHHHHHH
YASWENMINKAKGYAPELLAQHEARARAYQLRYIARQAIRNKDGKEAVKYLHLALKTAPE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIQAETGRTLATMAAAYLLKLLPLSLYKVFEELAQLLLGRIQAAKINRDGVSPALLK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCC
>Mature Secondary Structure 
TANLTYKKVATTKVSVVMPIYNVEAFVEDAIISVLTQSFKHFELLLINDCSPDNSLAIC
CCCCCHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHE
KKFSDPRIKIIEHKQNQGLAAARNTGIRHAIGQYVAFIDSDDMWHREKLMHHVTHLDQAP
ECCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCH
EVGISFCRSLFMNFQGQKIHLYQMPRLTNIKASDLLCRNPVGNGSAPVIRRETLSDIRFK
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCEECCCCCCCCCCEEEHHHHHHHHHH
ALNKSHPHSCYFDENFRQSEDIECWLRIVTTTHWKIEGIPAPLTFYRLNAQGLSADLKKQ
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCHHHHHH
YASWENMINKAKGYAPELLAQHEARARAYQLRYIARQAIRNKDGKEAVKYLHLALKTAPE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIQAETGRTLATMAAAYLLKLLPLSLYKVFEELAQLLLGRIQAAKINRDGVSPALLK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]