| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157961164
Identifier: 157961164
GI number: 157961164
Start: 1631078
End: 1631395
Strand: Reverse
Name: 157961164
Synonym: Spea_1336
Alternate gene names: NA
Gene position: 1631395-1631078 (Counterclockwise)
Preceding gene: 157961165
Following gene: 157961163
Centisome position: 31.53
GC content: 43.4
Gene sequence:
>318_bases ATGGCTATTGATATTAAACAAGTAAATACCCATGCCAATACTCGTATTGGCATGGGTATGAATGCGAAAGGTGCACCGGC TCAAACCGCACCGTCGGCGCCGGCTCAAAGCGCACAGAAAACTGATTCAGTGTCGATTACGGCGCAGGCTCAGCAAATCC AAAACGTACAGACTAAGATGGCTGACATGCCTGAAATCGATCAAAAGAAAGTAGATGCAATCAAAGCGGCAATAGCTGAA GGTCGTTATAAAATCGATCCTGAAAAACTGGCAACTAACATCGCTAGCTTTGAGAATGATCTTAAAGATTTAAGTTAA
Upstream 100 bases:
>100_bases TAAAATGTAAGAGTGTATGAATGAAAAAATCCTAAAGTATTGAGTCATGCTGCCGATAGCATGTGTAATAAACTCTCTTT ATTAACTGTTGGATCTCAAA
Downstream 100 bases:
>100_bases GCCCTGTGTTCCAGCTTTCGTTTACAACGTCGCGGTCACTGGGCTCTACAAAATAAAAAGTAACCAACACGTTTGACTCA AAATAGACAGGCCATTATGA
Product: anti-sigma-28 factor FlgM
Products: NA
Alternate protein names: Negative Regulator Of Flagellin Synthesis FlgM
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MAIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKMADMPEIDQKKVDAIKAAIAE GRYKIDPEKLATNIASFENDLKDLS
Sequences:
>Translated_105_residues MAIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKMADMPEIDQKKVDAIKAAIAE GRYKIDPEKLATNIASFENDLKDLS >Mature_104_residues AIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKMADMPEIDQKKVDAIKAAIAEG RYKIDPEKLATNIASFENDLKDLS
Specific function: Unknown
COG id: COG2747
COG function: function code KNU; Negative regulator of flagellin synthesis (anti-sigma28 factor)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11210; Mature: 11079
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKM CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH ADMPEIDQKKVDAIKAAIAEGRYKIDPEKLATNIASFENDLKDLS CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKM CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH ADMPEIDQKKVDAIKAAIAEGRYKIDPEKLATNIASFENDLKDLS CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA